View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12829_low_7 (Length: 412)

Name: NF12829_low_7
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12829_low_7
NF12829_low_7
[»] chr1 (3 HSPs)
chr1 (1-157)||(23804642-23804799)
chr1 (227-393)||(23804313-23804477)
chr1 (227-306)||(32724108-32724188)
[»] chr2 (3 HSPs)
chr2 (259-323)||(10547973-10548036)
chr2 (220-276)||(17070944-17071000)
chr2 (229-276)||(17087952-17087999)
[»] chr4 (3 HSPs)
chr4 (220-288)||(30838197-30838266)
chr4 (259-306)||(2054026-2054073)
chr4 (257-297)||(20633463-20633503)
[»] scaffold1449 (1 HSPs)
scaffold1449 (229-276)||(1278-1325)
[»] chr7 (1 HSPs)
chr7 (220-288)||(5235973-5236042)
[»] chr6 (2 HSPs)
chr6 (253-306)||(10649297-10649350)
chr6 (220-292)||(32320672-32320745)
[»] chr3 (1 HSPs)
chr3 (259-288)||(8071067-8071096)
[»] scaffold0018 (1 HSPs)
scaffold0018 (257-297)||(192290-192330)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 23804799 - 23804642
Alignment:
Q  1 attccatcatgaaagtgaataagtacacattaccatcatcaccataaaataattcaatccaaaaagctctgaaaagcatggccatcttcaattannnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  23804799 attccatcatgaaagtgaataagtacacattaccatcatcaccataaaataattcaatccaaaaagctctgaaaagcatggccatcttcaattattttta 23804700  T
Q  101 nncctaatctttttataagttcctttatatacccttttcataattcc-ttaataatat 157  Q
      |||||||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  23804699 ttcctaatctttttataagttcctttacgtacccttttcataattcctttaataatat 23804642  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 227 - 393
Target Start/End: Complemental strand, 23804477 - 23804313
Alignment:
Q  227 acatatacttacatcaaattatataattt-atcaaattattaacggtgtcgacgtatcagtgttcgtatcgtattcggtgtttgtgcttcgtagtatgac 325  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||||         | |||||| |||||||||| | ||||||||||| ||||||||||    
T  23804477 acatataattacattaaattatataattttatcaaattattaacggtag-------ttagtgtttgtatcgtattggatgtttgtgcttggtagtatgac 23804385  T
Q  326 cctatgggtgtcacatcata----ttcaatctagaagttaatttgggatcatgcttttttcatcgtgcacta 393  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  23804384 cctatgggtgtcacatcatattcattcaatctagaagttaatttgggatcatgccttttccatcgtgcacta 23804313  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 32724108 - 32724188
Alignment:
Q  227 acatatacttacatcaaattatataa-tttatcaaattattaacggtgtcgacgtatcagtgttcgtatcgtattcggtgt 306  Q
    ||||||| |||||| ||||||| ||| ||| |||||||||||||| ||||| ||||||||||||||| || ||||||||||    
T  32724108 acatataattacattaaattatgtaaatttctcaaattattaacgatgtcggcgtatcagtgttcgtgtcatattcggtgt 32724188  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 10547973 - 10548036
Alignment:
Q  259 aaattattaacggtgtcgacgtatcagtgttcgtatcgtattcggtgtttgtgcttcgtagtatg 323  Q
    |||||||||||||||||||||| ||||||| ||| |||||||  ||||||||||||| |||||||    
T  10547973 aaattattaacggtgtcgacgtgtcagtgtccgtgtcgtatt-agtgtttgtgcttcatagtatg 10548036  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 17070944 - 17071000
Alignment:
Q  220 caccgatacatatacttacatcaaattatataatttatcaaattattaacggtgtcg 276  Q
    |||| ||| ||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  17070944 caccaatatatataattacatcgaattatataattttttaaattattaacggtgtcg 17071000  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 17087952 - 17087999
Alignment:
Q  229 atatacttacatcaaattatataatttatcaaattattaacggtgtcg 276  Q
    ||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  17087952 atataattacatcgaattatataattttttaaattattaacggtgtcg 17087999  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 30838266 - 30838197
Alignment:
Q  220 caccgatacatatacttacatcaaattatataattt-atcaaattattaacggtgtcgacgtatcagtgt 288  Q
    ||||||||| |||| |||||  |||||||||||||| |||||||||||| | || |||||||||||||||    
T  30838266 caccgatacttataattacactaaattatataattttatcaaattattagcagtatcgacgtatcagtgt 30838197  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 2054073 - 2054026
Alignment:
Q  259 aaattattaacggtgtcgacgtatcagtgttcgtatcgtattcggtgt 306  Q
    ||||||||||||||||||| ||||||||||| || |||||| ||||||    
T  2054073 aaattattaacggtgtcgatgtatcagtgttagtgtcgtatccggtgt 2054026  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 20633503 - 20633463
Alignment:
Q  257 tcaaattattaacggtgtcgacgtatcagtgttcgtatcgt 297  Q
    ||||||||||| |||||||||||| ||||||| ||||||||    
T  20633503 tcaaattattagcggtgtcgacgtgtcagtgtccgtatcgt 20633463  T

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Target: scaffold1449 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 1278 - 1325
Alignment:
Q  229 atatacttacatcaaattatataatttatcaaattattaacggtgtcg 276  Q
    ||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  1278 atataattacatcgaattatataattttttaaattattaacggtgtcg 1325  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 5236042 - 5235973
Alignment:
Q  220 caccgatacatatacttacatcaaattatataattta-tcaaattattaacggtgtcgacgtatcagtgt 288  Q
    |||||||| ||||| |||||  ||||||||||||||  | ||||||||| |||||||||||| |||||||    
T  5236042 caccgatatatataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgt 5235973  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 10649350 - 10649297
Alignment:
Q  253 tttatcaaattattaacggtgtcgacgtatcagtgttcgtatcgtattcggtgt 306  Q
    |||||||||||| ||||||||||| ||||||| |||| || |||||| ||||||    
T  10649350 tttatcaaattactaacggtgtcggcgtatcattgtttgtgtcgtatccggtgt 10649297  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 32320672 - 32320745
Alignment:
Q  220 caccgatacatatacttacatcaaattatataattt-atcaaattattaacggtgtcgacgtatcagtgttcgt 292  Q
    |||||||||||||| | ||||  |||||| | |||| ||||||||||||||||||||  |||||||||| ||||    
T  32320672 caccgatacatataatgacattgaattatgtgattttatcaaattattaacggtgtcagcgtatcagtgctcgt 32320745  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 8071067 - 8071096
Alignment:
Q  259 aaattattaacggtgtcgacgtatcagtgt 288  Q
    ||||||||||||||||||||||||||||||    
T  8071067 aaattattaacggtgtcgacgtatcagtgt 8071096  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 192290 - 192330
Alignment:
Q  257 tcaaattattaacggtgtcgacgtatcagtgttcgtatcgt 297  Q
    |||||||||||||||||||| ||| ||||||| ||||||||    
T  192290 tcaaattattaacggtgtcggcgtgtcagtgtccgtatcgt 192330  T

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