View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12829_low_8 (Length: 318)
Name: NF12829_low_8
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12829_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 83 - 295
Target Start/End: Complemental strand, 33169306 - 33169095
Alignment:
| Q |
83 |
aaacatgtctatctttaaactcaaccacttccattcttttcttcctctcaataacactcctctgttttccaaccacaagaaaatccgacaccccttgtcc |
182 |
Q |
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| T |
33169306 |
aaacatgtctatctttaa-ctcaaccacttccactctcttcttcctctcaataacactcctctgttttccagccacaacaaaatccgacaccccttgtcc |
33169208 |
T |
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| Q |
183 |
ctatccatgttacccaccaccaacaggaagtggaaccgtcactcctacaaatccaactccttcagtttcaacagctccaccagcaccaccacaatctgga |
282 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33169207 |
ctatccatgttacccaccacccacaggaagtggaaccgtcactcctacaaatccaactccttcagtttcaacagctccaccagcaccaccacaatctgga |
33169108 |
T |
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| Q |
283 |
ttgccatatccac |
295 |
Q |
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|| |||||||||| |
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| T |
33169107 |
ttaccatatccac |
33169095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 44006976 - 44006928
Alignment:
| Q |
247 |
gtttcaacagctccaccagcaccaccacaatctggattgccatatccac |
295 |
Q |
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| T |
44006976 |
gtttcaacagctccaccagcaccaccacaatctgaattaccatatccac |
44006928 |
T |
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