View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1282_high_1 (Length: 557)
Name: NF1282_high_1
Description: NF1282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1282_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 41968099 - 41968424
Alignment:
| Q |
13 |
atacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacattgaggagcacattctacaatttcaaccatgcaatattag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41968099 |
atacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttcaaccatgcaatattag |
41968198 |
T |
|
| Q |
113 |
ttagtacatcattttagtgaatgaatgttgtaacatcaaattttaacaataaataaaaagtaaagaaaga---nnnnnnnnatagattttatatcaacaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41968199 |
ttagtacatcattttagtgaatgaatgttgtaacatcaaattttaacaataaataaaaagtaaagaaagattttttttattatagattttatatcaacaa |
41968298 |
T |
|
| Q |
210 |
tatcttttgtaaaatttatt--tgagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttcagtggtgccatcctgaaactcaa |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968299 |
tatcttttgtaaaatttatttatgagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttcagtggtgccatcctgaaactcaa |
41968398 |
T |
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| Q |
308 |
ttaaacaaaaatgaaattaacatgag |
333 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41968399 |
ttaaacaaaaatgaaattaacatgag |
41968424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 397 - 498
Target Start/End: Original strand, 41968488 - 41968589
Alignment:
| Q |
397 |
gttataagccttaccgttgggtcaggagtcactggagctggtggagttgcaggaggcgttggagtcactggagctggtggagttgtgggagtttctggag |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |
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| T |
41968488 |
gttataagccttaccgttgggtcaggagtcactggagctggtgaagttgcaggaggcgttggagtcactggagctggtggagttgtcggagttgcaggag |
41968587 |
T |
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| Q |
497 |
tt |
498 |
Q |
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|| |
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| T |
41968588 |
tt |
41968589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 1235107 - 1235278
Alignment:
| Q |
13 |
atacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacattgaggagcacattctacaatttcaaccatgcaatattag |
112 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1235107 |
atacttgcaatagaacaaacatggttttctgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttcaaccatgcaatattaa |
1235206 |
T |
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| Q |
113 |
ttagtacatcattttagtg-------aatgaatgttgtaacatcaaattttaacaataaataaaaagtaaaga |
178 |
Q |
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|||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
1235207 |
ttag-acataattttagtgaataatcaatgaatgttgtaacatcaaattttaacaataaacaaaaaataaaga |
1235278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 1235334 - 1235462
Alignment:
| Q |
211 |
atcttttgtaaaatttattt--gagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttcagtggtgccatcctgaaactcaat |
308 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1235334 |
atcttttgtaaaatttatttatgagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttcagtggtgccatcctgaaactcaat |
1235433 |
T |
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| Q |
309 |
t----aaacaaaaatgaaattaacatgag |
333 |
Q |
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| |||||||||||||||||||||||| |
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| T |
1235434 |
taaacaaacaaaaatgaaattaacatgag |
1235462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 400 - 498
Target Start/End: Original strand, 1235529 - 1235627
Alignment:
| Q |
400 |
ataagccttaccgttgggtcaggagtcactggagctggtggagttgcaggaggcgttggagtcactggagctggtggagttgtgggagtttctggagtt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
1235529 |
ataagccttaccgttgggtcaggagtcactggagctggtggagttgcaggaggcgttggagtcaccggagctggtggagttgtcggagttgctggagtt |
1235627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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