View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1282_high_2 (Length: 538)
Name: NF1282_high_2
Description: NF1282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1282_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 28 - 536
Target Start/End: Complemental strand, 6085845 - 6085337
Alignment:
| Q |
28 |
cagtgtcgtgtctgtatttgtgtcggttcttcatacgagtgtcgtgtctaaataatctagtgttgatatttaatcatgattgtgatatttgttgtatatt |
127 |
Q |
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| T |
6085845 |
cagtgtcgtgtctgtatttgtgtccgttcttcatacgagtgtcgtgtctaaataatctagtgttgatatttaatcatgattgtgatatttgttgtatatt |
6085746 |
T |
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| Q |
128 |
tttactcaacaggtttacaagaggtacaggcaatactaccaacagatgcaatcggtcgtgacatcatttgagtatgtttctggtctcaacaatgcagctc |
227 |
Q |
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| T |
6085745 |
tttactcaacaggtttacaagaggtacaggcaatactaccaacagatgcaatcggttgtgacatcatttgagtatgtttctggtctcaacaatgcagctc |
6085646 |
T |
|
| Q |
228 |
cttatgcaagtttggcgataaaagctatgtccaaacattttagatgcttgaagaaggcaattactgatcaactacagttcaataataaggtgcattttca |
327 |
Q |
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| T |
6085645 |
cttatgcaagtttggcgataaaagctatgtccaaacattttagatgcttgaagaaggcaattactgatcaactacagttcaataataaggcgcattttca |
6085546 |
T |
|
| Q |
328 |
cacaagcaaccggaaggaagaatctcctagattcggcaatagtgaaagaggaggaccttacagccataggtcaggttatcttgagcagcaacaacctgta |
427 |
Q |
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| T |
6085545 |
cacaagcaaccggaaggaagaatctcctagatttggcaatagtgaaagaggaggaccttacagccataggtcaggttatcttgagcagcaacaacctgta |
6085446 |
T |
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| Q |
428 |
tggcgacctcaaagaggactccccgagcgtgctgtgactgttcttagagcctggctctttgaacactttctgcatccgtaagtgccattctatgtttctt |
527 |
Q |
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| T |
6085445 |
tggcgacctcaaagaggactccccgagcgtgctgtgactgttcttagagcctggctctttgaacactttctgcatccgtaagtgccattctatgtttcgt |
6085346 |
T |
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| Q |
528 |
ttctgtcga |
536 |
Q |
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| T |
6085345 |
ttatgtcga |
6085337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 416 - 511
Target Start/End: Complemental strand, 23674298 - 23674203
Alignment:
| Q |
416 |
caacaacctgtatggcgacctcaaagaggactccccgagcgtgctgtgactgttcttagagcctggctctttgaacactttctgcatccgtaagtg |
511 |
Q |
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| T |
23674298 |
caacaacctgtttggcgacctcaaagagggttgcccgagcgtgctgtcagtgttcttaggggatggttgtttgaacactttttgcatccgtaagtg |
23674203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 23674579 - 23674432
Alignment:
| Q |
135 |
aacaggtttacaagaggtacaggcaatactaccaacagatgcaatcggtcgtgacatcatttgagtatgtttctggtctcaacaatgcagctccttatgc |
234 |
Q |
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| T |
23674579 |
aacaggtttgcaggaggtacagacaatactatcagcagattcatgcagtaataacttcatttgaatatgttgccggcctcggtaacgcagctccgtatgc |
23674480 |
T |
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| Q |
235 |
aagtttggcgataaaagctatgtccaaacattttagatgcttgaagaa |
282 |
Q |
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||||||||| ||||| || ||||||||||||||||||| ||||||||| |
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| T |
23674479 |
aagtttggctataaatgccatgtccaaacattttagattcttgaagaa |
23674432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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