View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1282_low_3 (Length: 530)
Name: NF1282_low_3
Description: NF1282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1282_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 48 - 505
Target Start/End: Original strand, 43606362 - 43606819
Alignment:
| Q |
48 |
gtacacgattaaggtagctacccgcattgtgaaagnnnnnnncaaaggcaattcctttctagcatcaaagataattgagtctagagacgaaattagaacc |
147 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606362 |
gtacacgattaaggtagctaccagcattgtgaaagaaaaaaacaaaggcaattcctttctagcatcaaagataattgagtctagagacgaaattagaacc |
43606461 |
T |
|
| Q |
148 |
ataattaaaatcagtaaaaatcatttagatgcagaaacatcgtttaggaatatcataaatatcatatgaaattaagatgtacatacggggaatctgagag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606462 |
ataattaaaatcagtaaaaatcatttagatgcagaaacatcgtttaggaatatcataaatatcatatgaaattaagatgtacatacggggaatctgagag |
43606561 |
T |
|
| Q |
248 |
attctcaaatttgtagtttataaaatatgccaggagtcccaaaattgaggcaacatccaagcgcacctgtaagtttgcagttaaaagttacaacactaaa |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606562 |
attctcaaatttgtagtttataaaatatgccaggagtcccaaaattgaggcaacatccaagcgcacctgtaagtttgcagttaaaagttacaacactaaa |
43606661 |
T |
|
| Q |
348 |
caaatagggtaattaaaggtactttacaaccaatattctaatgttatttcatcgctacattcttattcaattattacgggaaagaatgcatacttatata |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606662 |
caaatagggtaattaaaggtactttacaaccaatattctaatgttatttcatcgctacattcttattcaattattacgggaaagaatgcatacttatata |
43606761 |
T |
|
| Q |
448 |
tctgaaatacacagacatgtataatgtattggcttgtaaaactgggccaggttctgat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606762 |
tctgaaatacacagacatgtataatgtattggcttgtaaaactgggccaggttctgat |
43606819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University