View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1282_low_4 (Length: 403)
Name: NF1282_low_4
Description: NF1282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1282_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 96 - 399
Target Start/End: Complemental strand, 12811113 - 12810810
Alignment:
| Q |
96 |
caaccagtacacatttgctcattctctcaagcaaataacctcctctaccacttccaaccttcttccccaacaccccatcctaagcaacacatctcagcca |
195 |
Q |
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| T |
12811113 |
caacaagtccacatttgctcattctctcaagcaaataacctcctctaccacttccaaccttcttccccaacaccccatcctaagcaacacatctcaacca |
12811014 |
T |
|
| Q |
196 |
ctcacaccagacaattctgataaattaaatagacatctaaacatatcttgttagagacctccctccaaccactagtctagcaaaaaataacattttggcc |
295 |
Q |
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| T |
12811013 |
ctcacaccagacaattctgataaattaaacagacatctaaacctattttgttagagacctccctccaaccactagtctagcaaaaaataacattttggcc |
12810914 |
T |
|
| Q |
296 |
tcatcacccagaaccccacaaattcatcgtcgaaccaactcaccacccctaaacatgggcgaatgcaacatatggcttggagtggctataatcacaccat |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
12810913 |
ccatcacccagaaccccacaaattcatcgtcgaaccaactcaccacccctaaacatgggcgaatgcaacatatggcttggagtgtctatagtcacaccat |
12810814 |
T |
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| Q |
396 |
tttt |
399 |
Q |
| |
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|||| |
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| T |
12810813 |
tttt |
12810810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 32480399 - 32480452
Alignment:
| Q |
144 |
cacttccaaccttcttccccaacaccccatcctaagcaacacatctcagccact |
197 |
Q |
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| T |
32480399 |
cacttccaaccttcgtccccagcaccctaccctaaggaacacatctccgccact |
32480452 |
T |
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