View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1282_low_5 (Length: 380)
Name: NF1282_low_5
Description: NF1282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1282_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 55389084 - 55388740
Alignment:
| Q |
8 |
cgaataatattgatttgtctacggaatagggactgtatagagactaattccaaaacagacagatattacgtagactaaaacaaaaatagcaaagaccaaa |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55389084 |
cgaacaatattgatttgtctacggaatagggactgtatagagactaattccaaaacagacagatattacgtagactaaaacaaaaatagcaaagaccaaa |
55388985 |
T |
|
| Q |
108 |
agcaaattttctatttttgacagattaaaacagacgactttttagagactaaatccgcaaaattgcatattataggtgataaaatgttatttgagcctta |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55388984 |
agcaaattttctatttttgagagattaaaacagacgactttttagagactaaatctgcaaaattgcatattataggtgataaaatgttatttgagcctta |
55388885 |
T |
|
| Q |
208 |
taactacataattatttttatctttaggtttaattgcagttttggtcccctattttcactcgcttatggaattggtcttttttatcttattcatgttcgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55388884 |
taactacataattatttttatctttaggtttaattgcagttttggtcccctattttcactcgcttatggaattggtcttttttatcttattcatgttcgg |
55388785 |
T |
|
| Q |
308 |
cttgatgcaataagaagcaaaatgaaaatatgcatcatcatatgt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55388784 |
cttgatgcaataagaagcaaaatgaaaatatgcatcatcatatgt |
55388740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 36632969 - 36632937
Alignment:
| Q |
231 |
ttaggtttaattgcagttttggtcccctatttt |
263 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
36632969 |
ttaggtttaattgcagttttagtcccctatttt |
36632937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University