View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1282_low_6 (Length: 311)
Name: NF1282_low_6
Description: NF1282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1282_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 32181722 - 32181493
Alignment:
| Q |
23 |
atcatcatttgataagaaaaaacatgaagtgaaaatattccacattgcttttttctcgagaaacaaacactccctaaccctcctcatcaagcattcccat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32181722 |
atcatcatttgataagaaaaaacatgaagtgaaaatattccacattgcttttttctcgagaaacaaacactccctaaccctcctcatcaagcattcccat |
32181623 |
T |
|
| Q |
123 |
tttttggcattgccttctttattttcctactatcattgccgtattattctaaaacaattcgttttctatggattggccaatcacaaacgaacaaatgcac |
222 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32181622 |
tttttggcattgccctctttattttcctactatcattgccgtattattttataacaattcgttttctatggattggccaatcacaaacgaacaaatgcac |
32181523 |
T |
|
| Q |
223 |
actctctctcctcatacatcctctgtggtg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32181522 |
actctctctcctcatacatcctctgtggtg |
32181493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University