View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283-Insertion-2 (Length: 535)
Name: NF1283-Insertion-2
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283-Insertion-2 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Original strand, 16086903 - 16087442
Alignment:
| Q |
8 |
agttcagcatatttgactgtagattcctttatgactttgctcaaaccataattaattgttggattgt------------gaatatgtaggagttgataca |
95 |
Q |
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| T |
16086903 |
agttcagcatatttgactgtagattcctttatgactttgctcaaaccataaataattgttggtttcttcattttttttggtatatgtaggagttgataca |
16087002 |
T |
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| Q |
96 |
agctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgaggtctctcttatgtccatcaat |
195 |
Q |
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| T |
16087003 |
agctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgaggtctctcttatgtccatcaat |
16087102 |
T |
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| Q |
196 |
tctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtacagataatctttaatttgaactttgattataatttctaattgg |
295 |
Q |
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| T |
16087103 |
tctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtacagataatctttaatttgaactttgattataatttctaattgg |
16087202 |
T |
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| Q |
296 |
tagtttcacctgtattgtatataaccctattatattttacaggaatcatacaactcggctatacaaatgagtacgtcgttgctttttggaattgtgaagt |
395 |
Q |
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| T |
16087203 |
tagtttcacctgtattgtatataaccctattatattttacaggaatcatacaactcggccatacaaatgagtacgtcgttgctttttggaattgtgaagt |
16087302 |
T |
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| Q |
396 |
ggctgaatgatttctttcatttctgtttggaggctgcaagacagtattggactcgttaaataactgaatcatttagatgcaagctattaggctgaagggt |
495 |
Q |
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| T |
16087303 |
ggctgaatgatttctttcatttctgtttggaggctgcaagacagtattggactcgttaaataactgaatcatttagatgcaagctattaggctgaagggt |
16087402 |
T |
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| Q |
496 |
aatgttagcaatgaagacagttattgtagtttgaagttga |
535 |
Q |
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| T |
16087403 |
aatgttagcaatgaagacagttattgtagtttgaagttga |
16087442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 16439675 - 16439818
Alignment:
| Q |
75 |
gaatatgtaggagttgatacaagctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgag |
174 |
Q |
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| T |
16439675 |
gaatatgtaggagtggttacaagctttgaagattcagttgttggatttcatattaaatctgaaacttcacgttgaatttttaactattaaaattagtgag |
16439774 |
T |
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| Q |
175 |
gtctctcttatgtccatcaattctttagtaacaattgttgagaa |
218 |
Q |
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| T |
16439775 |
gtctctcttatgtccatcaatactttagtaccaattgttgagaa |
16439818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 16080874 - 16080975
Alignment:
| Q |
163 |
aaaattagtgaggtctctcttatgtccatcaattctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtacagataatct |
262 |
Q |
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| T |
16080874 |
aaaattagtgaggtctctcttatgaccttcaatacttcaggaacaattgttgaaaaattacaaagatcagcaacaccattcataaaggtacatataaact |
16080973 |
T |
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| Q |
263 |
tt |
264 |
Q |
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| T |
16080974 |
tt |
16080975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 16086213 - 16086376
Alignment:
| Q |
90 |
gatacaagctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgaggtctctcttatgtcc |
189 |
Q |
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| T |
16086213 |
gataccagctttgaagaatgaattgttggctttcatgtcaagtctcaaatcttatcttgattttctaacttctaaaatcagtgaggtctctcgtgtatcc |
16086312 |
T |
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| Q |
190 |
atcaattctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtac |
253 |
Q |
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| T |
16086313 |
atcaatactttagtcacaatttttcataagtttcaaagttcagcaataccattcatgaaggtac |
16086376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 16438644 - 16438745
Alignment:
| Q |
163 |
aaaattagtgaggtctctcttatgtccatcaattctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtacagataatct |
262 |
Q |
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| T |
16438644 |
aaaattagtgaggtct---ttatgtccatcaatactttggtaacaattggcgaaaggttacaaaggtcagcaaaaccatacatgaaggtacatataaact |
16438740 |
T |
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| Q |
263 |
ttaat |
267 |
Q |
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| T |
16438741 |
ttaat |
16438745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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