View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283-Insertion-3 (Length: 610)
Name: NF1283-Insertion-3
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283-Insertion-3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 288 - 610
Target Start/End: Original strand, 3810982 - 3811304
Alignment:
| Q |
288 |
gaatgtggaacataacaggtacccttaaaaagaaaataaagacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
387 |
Q |
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| T |
3810982 |
gaatgtggaacataacaggtacccttaaaaagaaaataaaaacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
3811081 |
T |
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| Q |
388 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacagcttcacgttca |
487 |
Q |
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| T |
3811082 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacagcttcacgttca |
3811181 |
T |
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| Q |
488 |
cgttcacgactaagactacgacgaacttcttcctctatagtttcgttaaggtcatgaaggttgtcattgtcaaagacaccaaaagttgaagaaacacact |
587 |
Q |
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| T |
3811182 |
cgttcacgactaagactacgacgaacttcttcctctatagtttcgttaaggtcatgaaggttgtcattgtcaaagacaccaaaagttgaagaaacacact |
3811281 |
T |
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| Q |
588 |
ctctagagtccaccactttagta |
610 |
Q |
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| T |
3811282 |
ctctagagtccaccactttagta |
3811304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 3810701 - 3810919
Alignment:
| Q |
8 |
gattacaatgagaatgcaatgcaagtgttttgtgcttgctttgttcaccnnnnnnnnn-cctagtttcgaactttatagagctagtttgtcatttttaag |
106 |
Q |
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| T |
3810701 |
gattacaatgagaatgcaatgcaagtgttttgtgcttgctttgttcaccttttttttttcctagtttcgaactttatagagctagtttgtcatttttaag |
3810800 |
T |
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| Q |
107 |
ggattttgttgttcttaggatttaatccttgctactttcattattaatgatattgttttcaccttnnnnnnnttgcagaagtgttactccaatttgattt |
206 |
Q |
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| T |
3810801 |
ggattttgttgttcttaggatttaatccttgctactttcattattaatgatattgttttcaccttaaaaaaattgcagaagtgttactccaatttgattt |
3810900 |
T |
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| Q |
207 |
atgcgcttcaagaatcaag |
225 |
Q |
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| T |
3810901 |
atacgcttcaagaatcaag |
3810919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 510 - 610
Target Start/End: Complemental strand, 27149782 - 27149682
Alignment:
| Q |
510 |
gaacttcttcctctatagtttcgttaaggtcatgaaggttgtcattgtcaaagacaccaaaagttgaagaaacacactctctagagtccaccactttagt |
609 |
Q |
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| T |
27149782 |
gaacttcttcctctatagtttcgttaaggtcatgaaggttgtcattgtcaaagacacaagaagttgaagaaacacactctctagagtccaccacattagt |
27149683 |
T |
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| Q |
610 |
a |
610 |
Q |
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| T |
27149682 |
a |
27149682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 563 - 610
Target Start/End: Complemental strand, 8435038 - 8434991
Alignment:
| Q |
563 |
acaccaaaagttgaagaaacacactctctagagtccaccactttagta |
610 |
Q |
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| T |
8435038 |
acaccagaagttgaagaaacacactctctagagtccatcactttagta |
8434991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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