View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1283-Insertion-4 (Length: 751)
Name: NF1283-Insertion-4
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283-Insertion-4 |
 | |
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| [»] chr4 (11 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 233 - 751
Target Start/End: Complemental strand, 51144229 - 51143711
Alignment:
| Q |
233 |
aaccaataattagattgtaggaactaaatgagaagctaatgtacttacgcaaaaatgacgcaacaaaggtaccggcagccaagtatacaaatttcataga |
332 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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|
| T |
51144229 |
aaccaataattagattgtaagaactaactgagaaactaatgcacttacgcaaaaatgacgcaacaaaggtacccgcagccaagtatacaaatttcagaga |
51144130 |
T |
|
| Q |
333 |
cacctgatcatagtaagtcgt---tagtaaatttctaatcattcgattcaaagttgtagtaagtcatatagtgtacaccagaagaagcaaccttcaccaa |
429 |
Q |
| |
|
|||||||||| |||||||||| || |||||||||| || ||||||||||||||||||| ||| ||| |||||||||||||| ||| |||||||| |
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|
| T |
51144129 |
cacctgatcacagtaagtcgtcgttatcaaatttctaaatgtttgattcaaagttgtagtaagccatgtagggtacaccagaagaaataacattcaccaa |
51144030 |
T |
|
| Q |
430 |
ttacatgagatcggtgagtaaattaccacggagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgaccatagttccaaatattaaaa |
529 |
Q |
| |
|
|||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
51144029 |
ttacataagatcagtgagtaaattacctcagagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgatcatagttccaaatattaaaa |
51143930 |
T |
|
| Q |
530 |
tcatcaagggcatggaaagtccattcccaatagcacctacagtccccataagcatcatcaataaacgatcccaaggatcagcaaatgagaaaagcttgta |
629 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
51143929 |
tcatcaagggtatagagagtccattcccaatagcacccaaagtccccataagc---atcaataaacgatccgaaggatcagcaaatgagaaaagcttgta |
51143833 |
T |
|
| Q |
630 |
taagggtactgttttggtggtttcatctttgtccttgctcttctctgaatcttgattgctgtcatgatcttcaactggttgaacactcataatatcgcct |
729 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
51143832 |
taagggtactgttttggtggttacatctttgtccttgctcttctctgaatcttgattgctgtcatgatcttcaactggttgaacactcacaaaatcgcct |
51143733 |
T |
|
| Q |
730 |
gccaacctgatatctgttgcca |
751 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
51143732 |
tccaacctgatatccgttgcca |
51143711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 240 - 751
Target Start/End: Complemental strand, 51155366 - 51154855
Alignment:
| Q |
240 |
aattagattgtaggaactaaatgagaagctaatgtacttacgcaaaaatgacgcaacaaaggtaccggcagccaagtatacaaatttcatagacacctga |
339 |
Q |
| |
|
|||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
51155366 |
aattagattggaagaactaactgagaaactaatgtacttacgcaaaaatgacgcaacaaaggtacccgcagccaagtatacaaatttcagagacacctga |
51155267 |
T |
|
| Q |
340 |
tcatagtaagtc---gttagtaaatttctaatcattcgattcaaagttgtagtaagtcatatagtgtacaccagaagaagcaaccttcaccaattacatg |
436 |
Q |
| |
|
||| |||||||| ||||| |||||||||| || ||||||||||||||||||| ||| ||| |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
51155266 |
tcacagtaagtcatcgttagaaaatttctaaatgtttgattcaaagttgtagtaagccatgtagggtacaccagaagaaataacattcaccaattacatg |
51155167 |
T |
|
| Q |
437 |
agatcggtgagtaaattaccacggagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgaccatagttccaaatattaaaatcatcaa |
536 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51155166 |
agatcagtgagtaaattacctcagagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgatcatagttccaaatattaaaatcatcaa |
51155067 |
T |
|
| Q |
537 |
gggcatggaaagtccattcccaatagcacctacagtccccataagcatcatcaataaacgatcccaaggatcagcaaatgagaaaagcttgtataagggt |
636 |
Q |
| |
|
||| || || |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
51155066 |
gggtatagagagtccattcccaatagcacctacagtccccataagc---atcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggt |
51154970 |
T |
|
| Q |
637 |
actgttttggtggtttcatctttgtccttgctcttctctgaatcttgattgctgtcatgatcttcaactggttgaacactcataatatcgcctgccaacc |
736 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||| ||| || ||| |||| | |
|
|
| T |
51154969 |
actgtattggtggtttcatctttgtccttgctcttgtctgaatcttgcatgctatcatgatctacaactggttgaacactcacaatttctccttccaaac |
51154870 |
T |
|
| Q |
737 |
tgatatctgttgcca |
751 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
51154869 |
tgatatccgttgcca |
51154855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 51156527 - 51156300
Alignment:
| Q |
8 |
tatgtccccatgaatgtcatcaagctttcgcccaccagtgtcataagcatcaatttccggcatcattttaaccgtttcgaacatcttaaaggctgcagct |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
51156527 |
tatgtctccatgaatgtcatcaagctttcgcccactagtgtcataagcatcaatttccggcatccttttaatcgtttcgaacatcttaaaggctgcagct |
51156428 |
T |
|
| Q |
108 |
tgtcctgcagcaaaagcacttaggcttggggatgtctgcccaaggcacctggggttggaaac-aatatagttaggagaaagaaaacatgttcatatatct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51156427 |
tgtcctgcagcaaaagcacttaggcttggggatgtctgcccaaggcacctggggttggaaacaaatatagttaggagaaagaaaacatgttcatatatct |
51156328 |
T |
|
| Q |
207 |
tacgagtggaaagaaataaattttagaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
51156327 |
tacgagtggaaagaaataaattttagaa |
51156300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 421 - 734
Target Start/End: Original strand, 29939020 - 29939330
Alignment:
| Q |
421 |
cttcaccaattacatgagatcggtgagtaaattaccacggagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgaccatagttccaa |
520 |
Q |
| |
|
||||||||| |||||||||| || || |||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
29939020 |
cttcaccaaatacatgagattagttagaaaattaccttggagacttcatcaacaacttttgacgttgtggattctccgaatgcattgatcatagttccaa |
29939119 |
T |
|
| Q |
521 |
atattaaaatcatcaagggcatggaaagtccattcccaatagcacctacagtccccataagcatcatcaataaacgatcccaaggatcagcaaatgagaa |
620 |
Q |
| |
|
||||||||| ||||||||| | || | ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
29939120 |
atattaaaaccatcaagggtaaagagattccattcccaatagcacctacagtccccataag---catcaataaacaatccaaaggatcagcaaatgagaa |
29939216 |
T |
|
| Q |
621 |
aagcttgtataagggtactgttttggtggtttcatctttgtccttgctcttctctgaatcttgattgctgtcatgatcttcaactggttgaacactcata |
720 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||| |||| | |
|
|
| T |
29939217 |
aagcttgtataaggatactgtgttggtgatttcatctttgtccttgctcttctctgaatcttgctttctgtcttcatcttcaactggttgaagactcgca |
29939316 |
T |
|
| Q |
721 |
atatcgcctgccaa |
734 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
29939317 |
atatctccttccaa |
29939330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 51145386 - 51145159
Alignment:
| Q |
8 |
tatgtccccatgaatgtcatcaagctttcgcccaccagtgtcataagcatcaatttccggcatcattttaaccgtttcgaacatcttaaaggctgcagct |
107 |
Q |
| |
|
|||||| ||| ||||||||||||| ||| ||||| ||||||||| ||||||||||||||| || | |||| |||||||||||||||||||||||||||| |
|
|
| T |
51145386 |
tatgtctccacgaatgtcatcaagttttttcccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagct |
51145287 |
T |
|
| Q |
108 |
tgtcctgcagcaaaagcacttaggcttggggatgtctgcccaaggcacctggggttggaaaca---atatagttaggagaaagaaaacatgttcatatat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||||| ||| |||| |
|
|
| T |
51145286 |
tgtcctgcagcaaaagcacttaggcttggagatgtctgcccaagacaccttgggttggaaacagagatatagttaggagaaaaaaaacatcttc--atat |
51145189 |
T |
|
| Q |
205 |
cttacgagtggaaagaaataaattttagaa |
234 |
Q |
| |
|
|||| |||||||||| |||||||| ||||| |
|
|
| T |
51145188 |
cttatgagtggaaaggaataaattgtagaa |
51145159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 496 - 712
Target Start/End: Complemental strand, 51197363 - 51197150
Alignment:
| Q |
496 |
ccaaatgcattgaccatagttccaaatattaaaatcatcaagggcatggaaagtccattcccaatagcacctacagtccccataagcatcatcaataaac |
595 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| ||||||||||||| || | |||||||||||||||||| |||||||| || | |||||||||| |
|
|
| T |
51197363 |
ccaaatgcattgatcatatttccaaatattaaagtcatcaagggcattgagattccattcccaatagcaccaacagtccc---aacaaacatcaataaat |
51197267 |
T |
|
| Q |
596 |
gatcccaaggatcagcaaatgagaaaagcttgtataagggtactgttttggtggtttcatctttgtccttgctcttctctgaatcttgattgctgtcatg |
695 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||| |||||| || |
|
|
| T |
51197266 |
gatccaaagaatcagcaaatgagaaaagcttgtataagggtactgtattggtggtttcatctttagcctttttcttttctgaatcttgcttgctgccaga |
51197167 |
T |
|
| Q |
696 |
atcttcaactggttgaa |
712 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
51197166 |
atctacaactggttgaa |
51197150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 29937553 - 29937741
Alignment:
| Q |
19 |
gaatgtcatcaagctttcgcccaccagtgtcataagcatcaatttccggcatcattttaaccgtttcgaacatcttaaaggctgcagcttgtcctgcagc |
118 |
Q |
| |
|
|||| ||||||||||||| |||| ||| ||||||||||||||||| ||| || |||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29937553 |
gaatatcatcaagctttctcccagtagtttcataagcatcaatttctggcttcctttttattgtttcaaacatcttaaaggctgcagcttgtcctgcagc |
29937652 |
T |
|
| Q |
119 |
aaaagcacttaggcttggggatgtctgcccaaggcacctggggttggaaac---aatatagttaggag--aaagaaaacatgttcatat |
202 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
29937653 |
aaaagcacttaggcttggagatgtttgcccaagacacctggggttggaaacagaaatatagttaggagaaaaagaaaatatgttcatat |
29937741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 51199375 - 51199242
Alignment:
| Q |
8 |
tatgtccccatgaatgtcatcaagctttcgcccaccagtgtcataagcatcaatttccggcatcattttaaccgtttcgaacatcttaaaggctgcagct |
107 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| ||||| |||||||||||||| ||| || |||||| |||||||||||| ||||| || |||||| |
|
|
| T |
51199375 |
tatgtctccacgaatgtcatcaagctttcgcccggttgtgtcgtaagcatcaatttcgggcttccttttaatcgtttcgaacattttaaatgccgcagct |
51199276 |
T |
|
| Q |
108 |
tgtcctgcagcaaaagcacttaggcttggggatg |
141 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||| |
|
|
| T |
51199275 |
tgtcctgcagcaaaagcactcaagcttggagatg |
51199242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 29938745 - 29938830
Alignment:
| Q |
268 |
ctaatgtacttacgcaaaaatgacgcaacaaaggtaccggcagccaagtatacaaatttcatagacacctgatcatagtaagtcgt |
353 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| || |||| |||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
29938745 |
ctaatgtacttacgcaaacatgacgcaacaaagctacccgccgccaggtatacaaatttcagagacacctgaccacagtaagtcgt |
29938830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 51212521 - 51212412
Alignment:
| Q |
8 |
tatgtccccatgaatgtcatcaagctttcgcccaccagtgtcataagcatcaatttccggcatcattttaaccgtttcgaacatcttaaaggctgcagct |
107 |
Q |
| |
|
|||||| || |||||||||| ||||||| |||| ||||||||||||||||||||||| || |||| | ||||| ||||||||||||||||||||| |
|
|
| T |
51212521 |
tatgtctccctgaatgtcattaagctttagcccgattttgtcataagcatcaatttccggcttccttttgattgtttcaaacatcttaaaggctgcagct |
51212422 |
T |
|
| Q |
108 |
tgtcctgcag |
117 |
Q |
| |
|
||||| |||| |
|
|
| T |
51212421 |
tgtccagcag |
51212412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 51197880 - 51197782
Alignment:
| Q |
241 |
attagattgtaggaactaaatgagaagctaatgtacttacgcaaaaatgacgcaacaaaggtaccggcagccaagtatacaaatttcatagacacctga |
339 |
Q |
| |
|
||||||||||| ||||||| || | |||||||||||||| |||| |||||||| |||||||| |||||||||||||| ||||||| ||||||||| |
|
|
| T |
51197880 |
attagattgtaagaactaatagatgaactaatgtacttacgtaaaagagacgcaacgaaggtacccgcagccaagtatacgaatttcaaggacacctga |
51197782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 585 - 644
Target Start/End: Original strand, 49739134 - 49739193
Alignment:
| Q |
585 |
catcaataaacgatcccaaggatcagcaaatgagaaaagcttgtataagggtactgtttt |
644 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
49739134 |
catcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgtttt |
49739193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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