View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12830_high_6 (Length: 327)
Name: NF12830_high_6
Description: NF12830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12830_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 5269955 - 5270281
Alignment:
| Q |
1 |
tgttttatttcaaataaatacaaagagacgaaactgttattgatggtttgtaaactggtggccatggcctttgattgcggaaacttccttccttcattgg |
100 |
Q |
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| T |
5269955 |
tgttttatttcaaataaatacaaaaagacgaaactgttattgatggtttgtaaactggtggccatggcctttgattgcggaaacttccttccttcattgg |
5270054 |
T |
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| Q |
101 |
tcacaaatacataaaattatgactataagagcaaaatcttccaatacttaaaacaagaaaggaaatgacatagaaagaccctaaattatggagtgttgtg |
200 |
Q |
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|||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5270055 |
tcacaaatacataaaagtacgactataagagcaaaatcttccgatacttaaaacaagaaaggaaatgacatagaaagaccctaaattatggagtgttgtg |
5270154 |
T |
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| Q |
201 |
acactaggtgcatctttctagctaaccatatctgaagggagggataagtaaatacaacctacatgctgttacattcgtctatgatatacnnnnnnnccct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5270155 |
acactaggtgcatctttctagctaaccatatctgaagggagggataagtaaatacaacctacatgctgttacattcgtctatgatatactttttttccct |
5270254 |
T |
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| Q |
301 |
gttttgagggaaataaactggtattcc |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5270255 |
gttttgagggaaataaactggtattcc |
5270281 |
T |
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