View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12830_low_1 (Length: 524)

Name: NF12830_low_1
Description: NF12830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12830_low_1
NF12830_low_1
[»] chr1 (5 HSPs)
chr1 (13-410)||(8345012-8345407)
chr1 (258-294)||(6084150-6084186)
chr1 (475-514)||(8344908-8344947)
chr1 (256-294)||(990529-990567)
chr1 (258-294)||(15438864-15438900)
[»] chr7 (5 HSPs)
chr7 (256-294)||(1569189-1569227)
chr7 (256-294)||(43282004-43282042)
chr7 (256-294)||(45601649-45601687)
chr7 (261-294)||(36101848-36101881)
chr7 (258-294)||(37976410-37976446)
[»] chr3 (3 HSPs)
chr3 (256-294)||(36304139-36304177)
chr3 (258-294)||(44571602-44571638)
chr3 (258-294)||(45289162-45289198)
[»] chr8 (5 HSPs)
chr8 (54-98)||(31755729-31755773)
chr8 (256-294)||(35643677-35643715)
chr8 (261-294)||(33827828-33827861)
chr8 (258-294)||(29520824-29520860)
chr8 (258-294)||(43904736-43904772)
[»] chr5 (2 HSPs)
chr5 (258-297)||(41894241-41894280)
chr5 (256-294)||(20367066-20367104)
[»] chr4 (4 HSPs)
chr4 (256-294)||(5306469-5306507)
chr4 (256-294)||(25574997-25575035)
chr4 (258-294)||(30480298-30480334)
chr4 (258-294)||(34208340-34208376)
[»] chr2 (2 HSPs)
chr2 (258-294)||(11412882-11412918)
chr2 (258-294)||(19336964-19337000)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 8345407 - 8345012
Alignment:
Q  13 acaaacaacctttgaacggcgtcgctgttgaaattggtcctgtcatgggtgctgaatcatggcctgctttgtctgaatccgccaaaattcctggtaaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8345407 acaaacaacctttgaacggcgtcgctgttgaaattggtcctgtcatgggtgctgaatcatggcctgctttgtctgaatccgccaaaattcctggtaaatt 8345308  T
Q  113 gccacccgaatcctcttcttcgaagattgctcctcctgctgctgctgttgatggatcaccttccacttctcaggttttgttctattactttccctaattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8345307 gccacccgaatcctcttcttcgaagattgctcctcctgct---gctgttgatggatcaccttccacttctcaggttttgttctattactttccctaattt 8345211  T
Q  213 tcttaaaatgannnnnnnnnncaggtatgttctctgtttactttctagagattaatgaattggatcaaaatatggtttatgaattgaaatgatagacaca 312  Q
    |||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8345210 tcttaaaatgattttttttttcaggtatgttctctgtttactttctagagattaatgaattggatcaaaatatggtttatgaattgaaatgatagacaca 8345111  T
Q  313 ccgacatgacacacatacgcgtcgaaactagtaatt-nnnnnnnnngttcaattgattgtagtttcgttagagtaatttgattaatataactgactcca 410  Q
    |||||||||||||||||||| |||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8345110 ccgacatgacacacatacgcttcgaaactagtaattaaaaaaaaaagttcaattgattgtagtttcgttagagtaatttgattaatataactgactcca 8345012  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 6084150 - 6084186
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| |||||||||||||||||||||||    
T  6084150 tagagattaatgagttggatcaaaatatggtttatga 6084186  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 514
Target Start/End: Complemental strand, 8344947 - 8344908
Alignment:
Q  475 catttgaggtatgaagtgattgtaagaggaatcctctctg 514  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  8344947 catttgagttataaagtgattgtaagaggaatcctctctg 8344908  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 990567 - 990529
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  990567 tctagagattaatgagttggatcaacatatggtttatga 990529  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 15438900 - 15438864
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| || ||||||||||||||||||||    
T  15438900 tagagattaatgagttagatcaaaatatggtttatga 15438864  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 1569189 - 1569227
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  1569189 tctagagattaatgagttggatcaaaatatggtttatga 1569227  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 43282004 - 43282042
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  43282004 tctagagattaatgagttggatcaaaatatggtttatga 43282042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 45601649 - 45601687
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  45601649 tctagagattaatgagttggatcaaaatatgatttatga 45601687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 36101881 - 36101848
Alignment:
Q  261 agattaatgaattggatcaaaatatggtttatga 294  Q
    |||||||||| |||||||||||||||||||||||    
T  36101881 agattaatgagttggatcaaaatatggtttatga 36101848  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 37976410 - 37976446
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  37976410 tagagattaatgagttggatccaaatatggtttatga 37976446  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 36304139 - 36304177
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  36304139 tctagagattaatgagttggatcaaaatatggtttatga 36304177  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 44571602 - 44571638
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  44571602 tagagattaatgagttggatccaaatatggtttatga 44571638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 45289198 - 45289162
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  45289198 tagagattaatgagttggatccaaatatggtttatga 45289162  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 31755729 - 31755773
Alignment:
Q  54 gtcatgggtgctgaatcatggcctgctttgtctgaatccgccaaa 98  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||    
T  31755729 gtcatggatgctgactcatggcctgctttatctgaatccgccaaa 31755773  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 35643715 - 35643677
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  35643715 tctagagattaatgagttggatcgaaatatggtttatga 35643677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 33827861 - 33827828
Alignment:
Q  261 agattaatgaattggatcaaaatatggtttatga 294  Q
    |||||||||||||||||| |||||||||||||||    
T  33827861 agattaatgaattggatctaaatatggtttatga 33827828  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 29520824 - 29520860
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  29520824 tagagattaatgagttggatccaaatatggtttatga 29520860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 43904772 - 43904736
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  43904772 tagagattaatgagttggatctaaatatggtttatga 43904736  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 41894241 - 41894280
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatgaatt 297  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  41894241 tagagattaatgagttggatccaaatatggtttatgaatt 41894280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 20367066 - 20367104
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  20367066 tctagagattaatgagttggatccaaatatggtttatga 20367104  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 5306469 - 5306507
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  5306469 tctagagattaatgagttggatccaaatatggtttatga 5306507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 25574997 - 25575035
Alignment:
Q  256 tctagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  25574997 tctagagattaatgagttggatcgaaatatggtttatga 25575035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 30480298 - 30480334
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30480298 tagagattaatgaattggactaaaatatggtttatga 30480334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 34208376 - 34208340
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  34208376 tagagattaatgagttggatccaaatatggtttatga 34208340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 11412882 - 11412918
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  11412882 tagagattaatgagttggatccaaatatggtttatga 11412918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 19337000 - 19336964
Alignment:
Q  258 tagagattaatgaattggatcaaaatatggtttatga 294  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  19337000 tagagattaatgagttggatcgaaatatggtttatga 19336964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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