View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12830_low_2 (Length: 519)
Name: NF12830_low_2
Description: NF12830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12830_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Complemental strand, 232560 - 232054
Alignment:
| Q |
16 |
aaagggacttttgcatttcatcattcaatcaatgtttaagagaatagatacaatccattctcatgacaataattacagtgctaatcatgttttccaatta |
115 |
Q |
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| T |
232560 |
aaagggacttttgcatttcatcattcaatcaatgtttaagagaataaatacaatccattctcatgacaataattacagtgctaatcatgttttccaatta |
232461 |
T |
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| Q |
116 |
aagtgtgaggattgttttttaagcaaagtcttgttcattttttgttttacaatcaaagctnnnnnnntattctttgttacttggcactgttcctattaat |
215 |
Q |
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| T |
232460 |
aagtgtgaggattgttttttaagcaaagtcttgttcattttttgttttaaaatcaaagctaaaaaaatattctttgttacttggcactgttcctattaat |
232361 |
T |
|
| Q |
216 |
gcttaattacctggtttcattcaatcaaaagcaatgaacacgacatgtgaatgcaaataatcatgtttattgccagtaaggctgaagcccacaccataat |
315 |
Q |
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| T |
232360 |
gcttaattacctggtttcattcaatcaaaagcaatgaacacgacatgtgaatgcaaataatcatgtttattgccagcaaggctgaagcccccactataat |
232261 |
T |
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| Q |
316 |
ttgttgatgatatttatttatttaaacatttttcagtaaattatttgcatcatatttcatttatgttactctaggacagagaggtgagtaggacccaaca |
415 |
Q |
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| T |
232260 |
ttgttgatgatatttatttatttaaacatttttcagtaaattatttgcatcatatttcatttatgttactataggacagagaggtgagtaggacccaaca |
232161 |
T |
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| Q |
416 |
agaggagt-atctgaccagcttcggatccaccttaccaactaactagtagtaggagtactc----------ctccactcccttattggcttctttaactt |
504 |
Q |
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| T |
232160 |
agaggagtaatctgaccagcttcggatccaccttaccaactaactagtagtaggagtactcctccactccactccactcccttattggcttctttaactt |
232061 |
T |
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| Q |
505 |
ccaacgt |
511 |
Q |
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||||||| |
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| T |
232060 |
ccaacgt |
232054 |
T |
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