View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12830_low_3 (Length: 494)
Name: NF12830_low_3
Description: NF12830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12830_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 211 - 486
Target Start/End: Original strand, 37173088 - 37173363
Alignment:
| Q |
211 |
tcttcaatggacctcatattattgtcacttttctcttatagcgtgccaaattgtgtaagtgtcttctttgcctcaagcgcagcagttatcctcttgtaaa |
310 |
Q |
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| T |
37173088 |
tcttcaatggacctcatattattgtcacttttctcttatagcgtgccaaattgtgtaagtgtcttctttgcctcaagcgcagcagttatcctcttgtaaa |
37173187 |
T |
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| Q |
311 |
gccagtcaacttccacgttcttgtttcttattacatcaacaatacaaaaatttcttttcaagataccttcttcagtttcgatcaaatttttcattttcaa |
410 |
Q |
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| T |
37173188 |
gccagtcaacttccacgttcttgtttcttattacatcaacaatacaaaaatttcttttcaagataccttcttcagtttcgatcaaatttttcattttcaa |
37173287 |
T |
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| Q |
411 |
ctctaatatgattccacatatcaactgcaacaatgccgaacggtattccacactttcttcggtgcactcctttgct |
486 |
Q |
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| T |
37173288 |
ctctaatatgattccacatatcaactgcaacaatgccgaacggtattccacactttctttggtgcactcttttgct |
37173363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 37172966 - 37173085
Alignment:
| Q |
17 |
agttgcaacactaaatcgaagcatccctcaccgagcaacgaagaaagggttcgactttagatgtggcagatttgagtgtttgagatattctagtagactc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37172966 |
agttgcaacactaaatcgaagcatccctcaccgagcaacgaagaaagggttcgactttagatgtggcagatttgactgtttgagatattctagtagactc |
37173065 |
T |
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| Q |
117 |
atccattgctatggccaact |
136 |
Q |
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| T |
37173066 |
atccattgctatggccaact |
37173085 |
T |
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