View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12830_low_7 (Length: 330)
Name: NF12830_low_7
Description: NF12830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12830_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 3895268 - 3895519
Alignment:
| Q |
10 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggag |
109 |
Q |
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| T |
3895268 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggag |
3895367 |
T |
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| Q |
110 |
ctgagaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtg |
209 |
Q |
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| T |
3895368 |
ctgagaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtg |
3895467 |
T |
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| Q |
210 |
ggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
261 |
Q |
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| T |
3895468 |
ggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 3895139 - 3895197
Alignment:
| Q |
13 |
gagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaagga |
71 |
Q |
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| T |
3895139 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaagga |
3895197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
283 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
319 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 3895016 - 3895079
Alignment:
| Q |
10 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
73 |
Q |
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| T |
3895016 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
3895079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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