View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12830_low_9 (Length: 242)
Name: NF12830_low_9
Description: NF12830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12830_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37665743 - 37665518
Alignment:
| Q |
1 |
aagttaggagaatgaatacaaatgagctgtatgaaggaccccttggccagtgttctagccttggagtctatatagcagcttattttactagctttatnnn |
100 |
Q |
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| T |
37665743 |
aagttaggagaatgaatacaaatgagctgtatgaaggaccccttggccagtgttctagccttggagtctatatagcagcttattttactagctttataaa |
37665644 |
T |
|
| Q |
101 |
nnnncagagtatttatcaatgagaaaaataatgaaaggcaaaggcaaaggcaaaggcaagaggtagttaaattt-ggcatttattgtactatctaatttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
37665643 |
aaaacagagtatttatcaatgagaaaaataatgaaaggcaaaggcaaaggcaaaggcaagaggtagttaaatttgggcatttattgtgctatctaatttt |
37665544 |
T |
|
| Q |
200 |
tgtctcggttcaccgcctacacattc |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37665543 |
tgtctcggttcaccgcctacacattc |
37665518 |
T |
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