View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12831_low_1 (Length: 888)

Name: NF12831_low_1
Description: NF12831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12831_low_1
NF12831_low_1
[»] chr7 (22 HSPs)
chr7 (14-870)||(4646938-4647776)
chr7 (14-161)||(41598171-41598318)
chr7 (599-719)||(4666917-4667039)
chr7 (582-713)||(4712075-4712208)
chr7 (582-719)||(4846009-4846148)
chr7 (583-717)||(4783831-4783967)
chr7 (583-717)||(4816260-4816396)
chr7 (583-717)||(4636820-4636956)
chr7 (112-272)||(17245420-17245580)
chr7 (663-719)||(4643714-4643772)
chr7 (663-719)||(4863965-4864023)
chr7 (460-518)||(4630780-4630838)
chr7 (576-699)||(4653476-4653601)
chr7 (452-492)||(4846225-4846265)
chr7 (664-719)||(4630971-4631028)
chr7 (452-494)||(4636708-4636750)
chr7 (458-494)||(4661649-4661685)
chr7 (458-494)||(4666786-4666822)
chr7 (458-518)||(4672527-4672587)
chr7 (663-719)||(4697184-4697242)
chr7 (664-719)||(4672720-4672777)
chr7 (462-503)||(4653375-4653416)
[»] scaffold0252 (1 HSPs)
scaffold0252 (14-358)||(4846-5190)
[»] chr2 (2 HSPs)
chr2 (14-358)||(25101607-25101951)
chr2 (130-266)||(23378308-23378444)
[»] chr3 (5 HSPs)
chr3 (12-326)||(8562975-8563286)
chr3 (21-289)||(17783823-17784095)
chr3 (21-289)||(19085342-19085614)
chr3 (21-289)||(19092450-19092722)
chr3 (21-326)||(6008894-6009199)
[»] chr8 (2 HSPs)
chr8 (14-326)||(14502697-14503009)
chr8 (25-328)||(15993282-15993585)
[»] chr5 (2 HSPs)
chr5 (14-326)||(22289352-22289664)
chr5 (21-328)||(28243619-28243926)
[»] chr4 (1 HSPs)
chr4 (582-719)||(18925736-18925875)
[»] chr6 (1 HSPs)
chr6 (160-289)||(26904527-26904656)


Alignment Details
Target: chr7 (Bit Score: 671; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 14 - 870
Target Start/End: Original strand, 4646938 - 4647776
Alignment:
Q  14 cagagatagacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaacc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |  ||||||||||||||||    
T  4646938 cagagatagacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattcacaaaataattctgcgctacttcttgcaaacc 4647037  T
Q  114 ttgttcactagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtattt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||    
T  4647038 ttgttcactagtaaccttatttcctacatcatcatcaagagaggttatacggtttaactttttccgagctgttgccgatgcatgaaaaaactttgtattt 4647137  T
Q  214 ctatcgccatccttgtaccagtgagctttagcacattgatgccaata--ggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacat 311  Q
    ||||| |||||||||||| |||| |||||||||| |||| |||||||  ||||||||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  4647138 ctatcaccatccttgtacaagtgtgctttagcacgttgacgccaatataggcatcgtcttaggacatcagccgttgcaagcgtttccttagctcaaacat 4647237  T
Q  312 gcaagtttggtcctcactagtagcttgcagccgtgtgtcttgcatttctttgcaacaattgtcaatatcgcgctttaaattgtggcaatgagtctttctc 411  Q
    || |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647238 gcgagtttggtcctcaccagtagcttgcagccgcgtgtcttgcatttctttgcaacaattgtcaatatcgcgctttaaattgtggcaatgagtctttctc 4647337  T
Q  412 cagacggacatatcctccgcgcatgatattaattttggaataatcattgaagcttgattgaaagattaactctttcaatttgattccttcctcctggaga 511  Q
    |||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4647338 cagacggacatatccttcccgcatgatatcaattttggaataatcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgaga 4647437  T
Q  512 gtacatatgaacaagcacaatccttattgacagggagcaccagcccatgcaatcacataccagcccatgcaatcacatcagcatattgttcaaccaaaat 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||| |||||| |||||||    
T  4647438 gtacatatgaacaagcacaatccttattgacagggagcaccagcccatgcaat--------------------cacatcagcataatgttcagccaaaat 4647517  T
Q  612 atcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaagtaaccttaccatataagtaaaaccagaatcaac 711  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647518 atcatctataaacatatgaaaaactgtatcacctgaattctttatatgtcaatcaaactcacaaaagtaaccttaccatataagtaaaaccagaatcaac 4647617  T
Q  712 ttcaaaataagttgatggacaggatagatagagtgaaaaaagagaaaactttgaaaactaattcttaatacatttctactcatttcaccattactaattt 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647618 ttcaaaataagttgatggacaggatagatagagtgaaaaaagagaaaactttgaaaactaattcttaatacatttctactcatttcaccattactaattt 4647717  T
Q  812 gacacattgcctttactttctcagtttatattgagtgtaactaaatttttacttggaag 870  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647718 gacacattgcctttactttctcagtttatattgagtgtaactaaatttttacttggaag 4647776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 41598318 - 41598171
Alignment:
Q  14 cagagatagacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaacc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||  |||||||||||| ||    
T  41598318 cagagatagacggattaataacatctatgacagaagaaaaatcactattctgttgttgaaaaatatttacaaaataatttcgtgttacttcttgcaagcc 41598219  T
Q  114 ttgttcactagtaaccttatttcctacatcatcatcaagagaggttat 161  Q
     ||||||| ||| || ||||| || |||||||||||||||||||||||    
T  41598218 atgttcaccagtgactttattaccaacatcatcatcaagagaggttat 41598171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 599 - 719
Target Start/End: Original strand, 4666917 - 4667039
Alignment:
Q  599 gttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gtaaccttaccatataagt 696  Q
    ||||| ||| ||||||||||||||| || ||||||||| ||||||||| |||||| ||||| |||||||||||||||||  | |||||||||||||||||    
T  4666917 gttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaaccttaccatataagt 4667016  T
Q  697 aaaaccagaatcaacttcaaaat 719  Q
    ||||  ||||||||||| |||||    
T  4667017 aaaaatagaatcaactttaaaat 4667039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 582 - 713
Target Start/End: Complemental strand, 4712208 - 4712075
Alignment:
Q  582 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 679  Q
    |||||||||||| ||||||||| ||||||||||||  ||||| || ||||||||| ||||||||  |||||| ||| |   |||||||||||||||  ||    
T  4712208 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 4712109  T
Q  680 aaccttaccatataagtaaaaccagaatcaactt 713  Q
    |||||||||||||||||||||| |||||||||||    
T  4712108 aaccttaccatataagtaaaactagaatcaactt 4712075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 582 - 719
Target Start/End: Complemental strand, 4846148 - 4846009
Alignment:
Q  582 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 679  Q
    |||||||||||||||| ||||| ||||||||||||  ||||| || ||||||||| ||||||||  ||||||  || |   |||||||||||||||  ||    
T  4846148 aatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcacaaaaatgt 4846049  T
Q  680 aaccttaccatataagtaaaaccagaatcaacttcaaaat 719  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  4846048 aaccttaccatataagtaaaactagaatcaacttcgaaat 4846009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 583 - 717
Target Start/End: Complemental strand, 4783967 - 4783831
Alignment:
Q  583 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 680  Q
    ||||||||||||   |||||| ||||| |||||||||| || || ||||||| | |||||||  | |  || ||||| |||||||||||||||||  |||    
T  4783967 atcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4783868  T
Q  681 accttaccatataagtaaaaccagaatcaacttcaaa 717  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4783867 accttaccatataagtaaaagcagaatcaacttcaaa 4783831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 583 - 717
Target Start/End: Complemental strand, 4816396 - 4816260
Alignment:
Q  583 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 680  Q
    |||||||||||| |  ||||| ||||| |||||||||| || || ||||||| | |||||||  | |  || ||||| |||||||||||||||||  |||    
T  4816396 atcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4816297  T
Q  681 accttaccatataagtaaaaccagaatcaacttcaaa 717  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4816296 accttaccatataagtaaaagcagaatcaacttcaaa 4816260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 583 - 717
Target Start/End: Original strand, 4636820 - 4636956
Alignment:
Q  583 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 680  Q
    |||||||| || | || |||||||||| | | |||||| || || ||||| ||| ||||||||  ||  || ||||| |||||||||||||||||  |||    
T  4636820 atcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgta 4636919  T
Q  681 accttaccatataagtaaaaccagaatcaacttcaaa 717  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4636920 accttaccatataagtaaaagcagaatcaacttcaaa 4636956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 112 - 272
Target Start/End: Original strand, 17245420 - 17245580
Alignment:
Q  112 ccttgttcactagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtat 211  Q
    ||||| ||| ||||||| ||||| || |||||||| ||||||||  | || || ||||||||||| | |||| | || |||||||||||||| || || |    
T  17245420 ccttgctcattagtaactttattaccgacatcatcgtcaagagaaataatgcgatttacctttttacgagctgtagcagatgcatgaaaaaatttggtgt 17245519  T
Q  212 ttctatcgccatccttgtaccagtgagctttagcacattgatgccaataggcatcgtcttg 272  Q
    |||||||||||||||||||||| ||||  || |||| |||  ||||||| ||||| |||||    
T  17245520 ttctatcgccatccttgtaccaatgagtctttgcacgttgccgccaataagcatcatcttg 17245580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 663 - 719
Target Start/End: Original strand, 4643714 - 4643772
Alignment:
Q  663 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 719  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  4643714 atcaaactcacaaaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaat 4643772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 663 - 719
Target Start/End: Original strand, 4863965 - 4864023
Alignment:
Q  663 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 719  Q
    |||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  4863965 atcaaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaat 4864023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 518
Target Start/End: Original strand, 4630780 - 4630838
Alignment:
Q  460 gaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacata 518  Q
    |||||||||||||||||||||||||||||||||||   |||||| || |||||||||||    
T  4630780 gaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacata 4630838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 699
Target Start/End: Original strand, 4653476 - 4653601
Alignment:
Q  576 ccatgcaatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaa 675  Q
    ||||| |||||||||||||| | ||||| |||| | ||||| |||||| || || |||||| ||||||||  || ||| ||| | |||||||| ||||||    
T  4653476 ccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcacctttatccttgatacgccaatcaaattcacaa 4653575  T
Q  676 aa--gtaaccttaccatataagtaaa 699  Q
    ||  ||||||| ||||||||||||||    
T  4653576 aaatgtaacctgaccatataagtaaa 4653601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 4846265 - 4846225
Alignment:
Q  452 taatcattgaagcttgattgaaagattaactctttcaattt 492  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  4846265 taatcgttgaagcttgattgaaagattaactctttcaattt 4846225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 719
Target Start/End: Original strand, 4630971 - 4631028
Alignment:
Q  664 tcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 719  Q
    ||||||||||||||  |||| ||||||||||||||||||  |||||||||||||||||    
T  4630971 tcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaat 4631028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 494
Target Start/End: Original strand, 4636708 - 4636750
Alignment:
Q  452 taatcattgaagcttgattgaaagattaactctttcaatttga 494  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  4636708 taatcgttgaagcttgattgaaagataaactctttcaatttga 4636750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 494
Target Start/End: Original strand, 4661649 - 4661685
Alignment:
Q  458 ttgaagcttgattgaaagattaactctttcaatttga 494  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4661649 ttgaagcttgattgaaagatcaactctttcaatttga 4661685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 494
Target Start/End: Original strand, 4666786 - 4666822
Alignment:
Q  458 ttgaagcttgattgaaagattaactctttcaatttga 494  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4666786 ttgaagcttaattgaaagattaactctttcaatttga 4666822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 4672527 - 4672587
Alignment:
Q  458 ttgaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacata 518  Q
    ||||||||| || ||||||||||||||||||||||||   |||||| || |||||||||||    
T  4672527 ttgaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacata 4672587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 719
Target Start/End: Complemental strand, 4697242 - 4697184
Alignment:
Q  663 atcaaactcacaaaagt--aaccttaccatataagtaaaaccagaatcaacttcaaaat 719  Q
    ||||||||||||||| |  ||||||||||||||||||||||||  ||||||||| ||||    
T  4697242 atcaaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaat 4697184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 664 - 719
Target Start/End: Original strand, 4672720 - 4672777
Alignment:
Q  664 tcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 719  Q
    ||||||||||||||  ||||||||||||||||||| |||  ||||||||| |||||||    
T  4672720 tcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaaaat 4672777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 503
Target Start/End: Original strand, 4653375 - 4653416
Alignment:
Q  462 agcttgattgaaagattaactctttcaatttgattccttcct 503  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  4653375 agcttgattgtaagattaactctttcaatttgagtgcttcct 4653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 165; Significance: 9e-88; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 5190 - 4846
Alignment:
Q  14 cagagatagacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaacc 113  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||||||  || ||||||||||||||  |||||||||| ||  ||| ||||||||||||    
T  5190 cagagatagacgaatttataacatctataacagaagaaaaatcactattttgttgttgaaaaatattcacaaaataatttcgcgctatttcttgcaaacc 5091  T
Q  114 ttgttcactagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtattt 213  Q
     |||||||||||||| ||||| || || |||||||||||||| |||||||| |||||||||||||| ||| ||||||| |||||||||||||| ||||||    
T  5090 atgttcactagtaactttattaccaacgtcatcatcaagagatgttatacgatttacctttttccaggctgttgccgaggcatgaaaaaacttcgtattt 4991  T
Q  214 ctatcgccatccttgtaccagtgagctttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgc 313  Q
    ||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| ||  |||||||   |||||| ||| |||| ||| |    
T  4990 ctatcaccatccttgtaccagtgagttttagcacgttgacgccaataggcatcgtcttgggacaacaagcgttgcatacgtttccgaagttcaagcatac 4891  T
Q  314 aagtttggtcctcactagtagcttgcagccgtgtgtcttgcattt 358  Q
     | |||| ||||| | || ||| |||| |||||||||||||||||    
T  4890 gattttgatcctccccagaagcatgcatccgtgtgtcttgcattt 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 25101951 - 25101607
Alignment:
Q  14 cagagatagacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaacc 113  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||  || || |||||||||||  |||||||||||||  ||||||| ||||||||    
T  25101951 cagagacaaacggattaataacatctatgacagaagaaaaatcactattatgttgctgaaaaatattcacaaaataattccgcgctacttcctgcaaacc 25101852  T
Q  114 ttgttcactagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtattt 213  Q
    ||||||||| |||||  |||| ||| ||||||||| ||| |||||||||| ||||||||||||||  ||| ||| ||| |||||||||||||||||||||    
T  25101851 ttgttcacttgtaactgtattacctgcatcatcatgaagggaggttatacagtttacctttttccgggctgttgtcgaggcatgaaaaaactttgtattt 25101752  T
Q  214 ctatcgccatccttgtaccagtgagctttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgc 313  Q
    || ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||  |  | ||||| |  ||||||||| |||| |||||    
T  25101751 ctgtcgccatccttataccagtgagctttagcacgttgacgccaataggcatcgtcttgggacattaagctttgcatgcatttcctaaggtcaagcatgc 25101652  T
Q  314 aagtttggtcctcactagtagcttgcagccgtgtgtcttgcattt 358  Q
       |||||||||| | || ||| | ||| ||| ||||||||||||    
T  25101651 ggttttggtcctccccagaagcatacagtcgtttgtcttgcattt 25101607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 23378444 - 23378308
Alignment:
Q  130 ttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgt 229  Q
    ||||| ||||||||||| ||||||||  | || || |||||||| || | |||||   | |||||||| |||   |||||||||||||| ||||||||||    
T  23378444 ttattacctacatcatcgtcaagagaaataatgcgatttaccttctttcgagctaaaacggatgcatggaaattttttgtatttctatcaccatccttgt 23378345  T
Q  230 accagtg-agctttagcacattgatgccaataggcatc 266  Q
    |||| || | |||| |||| ||| ||||||||||||||    
T  23378344 accaatgtatcttt-gcacgttgttgccaataggcatc 23378308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 3e-66; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 8563286 - 8562975
Alignment:
Q  12 agcagagatagacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaa 111  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||   ||||||||||||  |||| ||||| ||  ||||||||||||||    
T  8563286 agcagagatagacggatttataacatctataacagaagaaaaatcactattctg---ttgaaaaatattcacaaagtaattacgcgctacttcttgcaaa 8563190  T
Q  112 ccttgttcactagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtat 211  Q
    || |||||| ||||||| ||||  ||  | ||||| ||||||||| |||| || |||||||| |||| || | ||||||| |||||||||||||||||||    
T  8563189 ccatgttcattagtaactttatgaccaccgtcatcgtcaagagagtttatgcgatttaccttcttccgagttgttgccgaggcatgaaaaaactttgtat 8563090  T
Q  212 ttctatcgccatccttgtaccagtgagctttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacat 311  Q
    |||| || |||||||| ||| |||||| |||||||| |||| |||||||||||||||||||||| ||||  |||||||   |||||| |||||||| |||    
T  8563089 ttctgtcaccatccttatactagtgagttttagcacgttgacgccaataggcatcgtcttgggatagcaatcgttgcatacgtttccgaagctcaaccat 8562990  T
Q  312 gcaagtttggtcctc 326  Q
    || |||||| |||||    
T  8562989 gcgagtttgatcctc 8562975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 17784095 - 17783823
Alignment:
Q  21 agacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaaccttgttca 120  Q
    |||||||||||||||||| || || |||||| ||||||||| ||| ||||||||||||||| ||||||| |||| | | || ||||||| | | || |||    
T  17784095 agacggattaataacatcaataacggaagaagaatcactattctgttgttgaaaaatatttacaaaatatttccttgccacgtcttgcatatcctgctca 17783996  T
Q  121 ctagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgc 220  Q
     ||||||  ||||| ||| ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||    
T  17783995 ttagtaattttattacctgcatcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgc 17783896  T
Q  221 catccttgtaccagtgagctttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 289  Q
    ||||||| ||||| || | ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  17783895 catccttataccaatgggtttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 17783823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 19085614 - 19085342
Alignment:
Q  21 agacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaaccttgttca 120  Q
    |||||||||||||||||| || || |||||| ||||||||| ||| ||||||||||||||| ||||||| |||| | | || ||||||| | | || |||    
T  19085614 agacggattaataacatcaataacggaagaagaatcactattctgttgttgaaaaatatttacaaaatatttccttgccacgtcttgcatatcctgctca 19085515  T
Q  121 ctagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgc 220  Q
     ||||||  ||||| ||| ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||    
T  19085514 ttagtaattttattacctgcatcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgc 19085415  T
Q  221 catccttgtaccagtgagctttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 289  Q
    ||||||| ||||| || | ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  19085414 catccttataccaatgggtttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 19085342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 19092722 - 19092450
Alignment:
Q  21 agacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaaccttgttca 120  Q
    |||||||||||||||||| || || |||||| ||||||||| ||| ||||||||||||||| ||||||| |||| | | || ||||||| | | || |||    
T  19092722 agacggattaataacatcaataacggaagaagaatcactattctgttgttgaaaaatatttacaaaatatttccttgccacgtcttgcatatcctgctca 19092623  T
Q  121 ctagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgc 220  Q
     ||||||  ||||| ||| ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||    
T  19092622 ttagtaattttattacctgcatcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgc 19092523  T
Q  221 catccttgtaccagtgagctttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 289  Q
    ||||||| ||||| || | ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  19092522 catccttataccaatgggtttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 19092450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 6008894 - 6009199
Alignment:
Q  21 agacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaaccttgttca 120  Q
    |||||||||||||||||| || || |||||| ||||||||| ||| ||||||||||||||| ||||||| |  | | | |||||||||| | | || |||    
T  6008894 agacggattaataacatcaataacggaagaagaatcactattctgttgttgaaaaatatttacaaaatattgtcttgccacttcttgcatatcctgctca 6008993  T
Q  121 ctagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgc 220  Q
     ||||||  ||||| ||  |||||||||||||||| |||||||| |||||||| || | |||  ||||||| || ||||||||||| ||||| |  || |    
T  6008994 ttagtaattttattacccgcatcatcatcaagagaagttatacgatttaccttctttcgagccgttgccgaagcgtgaaaaaacttggtattacggtcac 6009093  T
Q  221 catccttgtaccagtgagctttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttg 320  Q
    ||| ||| ||||| || | ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||    
T  6009094 catacttataccaatgggtttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttg 6009193  T
Q  321 gtcctc 326  Q
    ||||||    
T  6009194 gtcctc 6009199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 14503009 - 14502697
Alignment:
Q  14 cagagatagacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaacc 113  Q
    |||| |||||||||||||||||||| || || |||||| |||||||||  || ||||||||||||||| ||||||| |  | | | |||||||||| | |    
T  14503009 cagaaatagacggattaataacatcaataacggaagaagaatcactattatgttgttgaaaaatatttacaaaatattgtcttgccacttcttgcatatc 14502910  T
Q  114 ttgttcactagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtattt 213  Q
     || ||| ||||||  ||||| ||  |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| |||||     
T  14502909 ctgctcattagtaattttattacccgcatcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtatta 14502810  T
Q  214 ctatcgccatccttgtaccagtgagctttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgc 313  Q
    |  ||||||||||| ||||| || | ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| |||||||    
T  14502809 cggtcgccatccttataccaatgggtttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgc 14502710  T
Q  314 aagtttggtcctc 326  Q
     |  |||||||||    
T  14502709 gaacttggtcctc 14502697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 25 - 328
Target Start/End: Original strand, 15993282 - 15993585
Alignment:
Q  25 ggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaaccttgttcactag 124  Q
    |||||||||||||| || || |||||| ||||||||| ||| ||||||||||||||| ||||||| |  | | | |||||||||| | | || ||| |||    
T  15993282 ggattaataacatcaataacggaagaagaatcactattctgttgttgaaaaatatttacaaaatattgacttgccacttcttgcatatcctgctcattag 15993381  T
Q  125 taaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatc 224  Q
    |||  ||||| ||  |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||    
T  15993382 taattttattacccgcatcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatc 15993481  T
Q  225 cttgtaccagtgagctttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcc 324  Q
    ||| ||||| || | ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||    
T  15993482 cttataccaatgggtttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcc 15993581  T
Q  325 tcac 328  Q
    ||||    
T  15993582 tcac 15993585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 22289664 - 22289352
Alignment:
Q  14 cagagatagacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaacc 113  Q
    |||| |||||||||||||||||||| || || |||||| |||||||||  || ||||||||||||||| ||||||| |  | | | |||||||||| | |    
T  22289664 cagaaatagacggattaataacatcaataacggaagaagaatcactattatgttgttgaaaaatatttacaaaatattgtcttgccacttcttgcatatc 22289565  T
Q  114 ttgttcactagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtattt 213  Q
     || ||| ||||||  ||||| ||  |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| |||||     
T  22289564 ctgctcattagtaattttattacccgcatcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtatta 22289465  T
Q  214 ctatcgccatccttgtaccagtgagctttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgc 313  Q
    |  ||||||||||| ||||| || | ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| |||||||    
T  22289464 cggtcgccatccttataccaatgggtttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgc 22289365  T
Q  314 aagtttggtcctc 326  Q
     |  |||||||||    
T  22289364 gaacttggtcctc 22289352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 28243926 - 28243619
Alignment:
Q  21 agacggattaataacatctatgacagaagaaaaatcactatcctgctgttgaaaaatattttcaaaataattccgtactacttcttgcaaaccttgttca 120  Q
    |||||||||||||||||| || || ||||||| ||||||||  || ||||||||||||||| ||||||| | || ||| |||||||||| | | || |||    
T  28243926 agacggattaataacatcaataacggaagaaagatcactattttgttgttgaaaaatatttacaaaatattgccttaccacttcttgcatatcctgctca 28243827  T
Q  121 ctagtaaccttatttcctacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgc 220  Q
     ||||||  ||||| |   || |||||||||||||||||||| | |||||||| || |||||| | ||||| || ||||||||||| ||||| |  |  |    
T  28243826 ttagtaattttattactagcaccatcatcaagagaggttataagatttaccttctttcaagctgtagccgaagcgtgaaaaaacttggtattacggttac 28243727  T
Q  221 catccttgtaccagtgagctttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttg 320  Q
    ||||||| ||||| |||| ||| |||  |||| ||||||| ||||| | ||||||||| ||||||||||    |||||| ||||| ||||||| |  |||    
T  28243726 catccttataccaatgagtttttgcatgttgaagccaataagcatcatattgggacagtagccgttgcattcttttccttagctcgaacatgcgaacttg 28243627  T
Q  321 gtcctcac 328  Q
    ||||||||    
T  28243626 gtcctcac 28243619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 582 - 719
Target Start/End: Complemental strand, 18925875 - 18925736
Alignment:
Q  582 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 679  Q
    |||||||||||||| | ||||| ||||| ||||||||||||| || ||||||||| ||||||||  |||||||||||| ||||||||||| |||||  |     
T  18925875 aatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatgc 18925776  T
Q  680 aaccttaccatataagtaaaaccagaatcaacttcaaaat 719  Q
    || ||||||| |||||||||  ||||||||||||||||||    
T  18925775 aatcttaccaaataagtaaaggcagaatcaacttcaaaat 18925736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 160 - 289
Target Start/End: Complemental strand, 26904656 - 26904527
Alignment:
Q  160 atacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctttagcacattgatgccaat 259  Q
    ||||| |||||||| |||||||||   || ||| ||||||| || |||||||||| ||| |||||||||||||| ||||  ||||||| |||  ||||||    
T  26904656 atacgatttaccttcttccaagctgaagcagatacatgaaagaattttgtatttcgatcaccatccttgtaccaatgagtcttagcacgttgtcgccaat 26904557  T
Q  260 aggcatcgtcttgggacagcagccgttgca 289  Q
    ||||||| ||||||||||  ||||||||||    
T  26904556 aggcatcatcttgggacaaaagccgttgca 26904527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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