View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12831_low_2 (Length: 600)
Name: NF12831_low_2
Description: NF12831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12831_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 16 - 591
Target Start/End: Original strand, 37212792 - 37213392
Alignment:
| Q |
16 |
cattttagaggatctcaaagagc--------ccagaagatctcaaagtgcgacggagatcagaaatcattgtggaatccaaatttaatcgccttctagta |
107 |
Q |
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| T |
37212792 |
cattttagaggatctcaaagagcatcggcgaccagaagatctcaaagtgcaacggagatcagaaatcattgtggaatccaaatttaatcgccttctagta |
37212891 |
T |
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| Q |
108 |
gagacggggcaatccctagactctgactgaacatatccacaaggcaacaagttgaagttagtgttaaatttaaaataacaagacagataatattttttag |
207 |
Q |
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| T |
37212892 |
gagacagggcaatccctagactctgactgaacatatccacaaggcaacaagttgaagttagtgttaaatttaaaataacaagacagataatattttttag |
37212991 |
T |
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| Q |
208 |
agaaaccgaggaaacatgtcattgtacattaagtcctaagcatatacattgatgaagaggttttccattgttataaacaaccaaaaatgttctattcaag |
307 |
Q |
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| T |
37212992 |
agaaaccgaggaaacatgtcattgtacattaagtcctaagcatatacattgatgaagaggttttccattgttataaacaaccaaaaatgttctattcaag |
37213091 |
T |
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| Q |
308 |
gccaaactaaatattatagaaaatttcctttaacacttacttcctactgggagtaaaaatgagaagatcacttttcatgtgtggtgaacnnnnnnntatt |
407 |
Q |
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| T |
37213092 |
gctaaactaaatattatagaaaatttcctttaacacttacttcctactgtgagtaaaaatgagaagatcacttttcatgtgtggtgaacaaaaagatgtt |
37213191 |
T |
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| Q |
408 |
acttttttagttattaatattggtcaattaaaattctatggtccatcaggaaatgaaaaatgacttccacttgaagtaatatttttaataaaaatgtca- |
506 |
Q |
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| T |
37213192 |
acttttttagttattaatattggtcaattaaaattctatggtccatcaggaaatgaaaaatgacttccacttgaagtaatatttttaataaaaatgtcaa |
37213291 |
T |
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| Q |
507 |
----------------acttttctataaggcaaaatcatcaccaaattcacagaaataacacataacacttcaaggtttaacaaatttcatactcctatg |
590 |
Q |
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| T |
37213292 |
cttttaaataatttatacttttctataaggcaaaatcatcaccaaattcacagaaataacacataacacttcaaggtttaacaaatttcatactcctatg |
37213391 |
T |
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| Q |
591 |
c |
591 |
Q |
| |
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| T |
37213392 |
c |
37213392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 37218141 - 37218299
Alignment:
| Q |
16 |
cattttagaggatctcaaagagc--------ccagaagatctcaaagtgcgacggagatcagaaatcattgtggaatccaaatttaatcgccttctagta |
107 |
Q |
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| T |
37218141 |
cattttagaggatctcaaagagcatcggcgaccagaagatctcaaagtgcgacggagatcagaaatcattgtggactttggatttaatttctttctagga |
37218240 |
T |
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| Q |
108 |
gagacggggcaatccctagactctgactgaacatat--ccacaaggcaacaagttgaag |
164 |
Q |
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| T |
37218241 |
gtgacacggcaatccctatactctaactgaacatatacacacaaggcaacaaattgaag |
37218299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 37203774 - 37203829
Alignment:
| Q |
243 |
ctaagcatatacattgatgaagaggttttccattgttataaacaaccaaaaatgtt |
298 |
Q |
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| T |
37203774 |
ctaagcatatacattgataaagaggttttgctttgttataaacaaccaaaagtgtt |
37203829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 37196070 - 37196127
Alignment:
| Q |
246 |
agcatatacattgatgaagaggttttccattgttataaacaaccaaaaatgttctatt |
303 |
Q |
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| T |
37196070 |
agcatatgcattgatgaagaggttttgctttgctataaacaaccaaaagtgttttatt |
37196127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 37203611 - 37203664
Alignment:
| Q |
107 |
agagacggggcaatccctagactctgactgaacatatccacaaggcaacaagtt |
160 |
Q |
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| T |
37203611 |
agagacagggcaatcccaagactcagactgaacatatacacaaggcaagaagtt |
37203664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 37184657 - 37184695
Alignment:
| Q |
125 |
agactctgactgaacatatccacaaggcaacaagttgaa |
163 |
Q |
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| T |
37184657 |
agactgtgactgaacatatgcacaaggcaacaagttgaa |
37184695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 7528662 - 7528755
Alignment:
| Q |
145 |
cacaaggcaacaagttgaagttagtgttaaatttaaaataacaa---gacagataatattttttagagaaaccgaggaaacatgtcattgtacat |
236 |
Q |
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| T |
7528662 |
cacaaggcaacaagttgaagttaggattaaatctaaaacaacaacaagacaga-attttattttagagaaactcaggaaacatgtcattgtacat |
7528755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 413145 - 413109
Alignment:
| Q |
200 |
ttttttagagaaaccgaggaaacatgtcattgtacat |
236 |
Q |
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| T |
413145 |
ttttttagagaaacctaagaaacatgtcattgtacat |
413109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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