View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12831_low_3 (Length: 434)
Name: NF12831_low_3
Description: NF12831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12831_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 9370679 - 9371085
Alignment:
| Q |
18 |
gaaattaatcatgagcacaatttgaaaaaaccaacataacccatattggaattctcatttctcaaaatggatgcctaacctgttccctagtcaacaaaat |
117 |
Q |
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| T |
9370679 |
gaaattaatcatgagcacaatatgaaaaaaccaacataacccatattggaattctcatttctcaaaatggatgcctaacctgttccctagtcaacaaaat |
9370778 |
T |
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| Q |
118 |
caataatcctcaaaccctttaaaatattattcacaacaaaatatgtcacatcacagaatctatcatagagatgcaaatgtattatttaattgacatgcca |
217 |
Q |
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| T |
9370779 |
taataatcctcaaacccattaaaatattattcacaacaaaatatgtcacatcacagaatctatcatagagatgcaaatgtattatttaattgacatgcca |
9370878 |
T |
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| Q |
218 |
accaattaaacttatgtatctcacatggtatttctatgttagtgtgccctttctctaatgtttctattattattcctataagtattattataaacttcaa |
317 |
Q |
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| T |
9370879 |
accaattaaacttatgtatctcacatggtatttctatgttagtgtgccctttctctaatgtttctattattattcctataagtattattataaacttcaa |
9370978 |
T |
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| Q |
318 |
aagaatccaagaaaatttgttacaaacatccgtctgatttgcattggttatattggtcggtgtggggaccaaattgtagaattattctttgagttttggt |
417 |
Q |
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| T |
9370979 |
aagaatccaataaaatttgttacaaacatccgtctgatttgcattggttatattggtcggtgtggggaccaaattgtagaattattctttgagttttggt |
9371078 |
T |
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| Q |
418 |
atctctg |
424 |
Q |
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| T |
9371079 |
atctctg |
9371085 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 33820319 - 33820277
Alignment:
| Q |
337 |
ttacaaacatccgtctgatttgcattggttatattggtcggtg |
379 |
Q |
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| T |
33820319 |
ttacaaacatccgtctgatttgcgttggttatattggtcggtg |
33820277 |
T |
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