View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12831_low_5 (Length: 283)
Name: NF12831_low_5
Description: NF12831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12831_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 30061940 - 30061671
Alignment:
| Q |
14 |
agagccataccagtatcatatcagcagctggaagaaattcaacttggtgggtcacaaaaataactgttttatctgcaagttccgacaacacatactcctg |
113 |
Q |
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| T |
30061940 |
agagccataccagtatcatatcagcagctggaagaaattcaacttggtgggtcacaaaaataactgttttatctgctagttccgacaacacatactcctg |
30061841 |
T |
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| Q |
114 |
cagttacattacatgtcatagattaagaaaaacgcccagaaccaattaagttaaacggtgtcattaattagtgggagaaactaactctgaacaattctga |
213 |
Q |
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| T |
30061840 |
cagttacattacatgtcatagattaagaaaaacacccagaaccaattaagttaaacagtgtcattaattagtgggagaaactaactctgaacaattctga |
30061741 |
T |
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| Q |
214 |
tccagtgtgggcatcaagtgcactaaaagggtcatcaaggagataaacatcagcatcttggtagagtgcc |
283 |
Q |
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| T |
30061740 |
tccagtgtgggcatcaagtgcactaaaggggtcatcaaggagataaatatcagcatcttggtagagtgcc |
30061671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 39505287 - 39505389
Alignment:
| Q |
16 |
agccataccagtatcatatcagcagctggaagaaattcaacttggtgggtcacaaaaataactgttttatctgcaagttccgacaacacatactcctgca |
115 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||| | | || | ||||||||||| |
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| T |
39505287 |
agccataccagtatcaaatcagcagcaggaagaaattcaacttgatgggtcacaaaaatgactgttttatttgcaagtgctgtcagtatatactcctgca |
39505386 |
T |
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| Q |
116 |
gtt |
118 |
Q |
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||| |
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| T |
39505387 |
gtt |
39505389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 39505452 - 39505543
Alignment:
| Q |
191 |
aaactaactctgaacaattctgatccagtgtgggcatcaagtgcactaaaagggtcatcaaggagataaacatcagcatcttggtagagtgc |
282 |
Q |
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| T |
39505452 |
aaactaaccctaaacaactctgatccagtgtgtgcgtcaactgcactgaaggggtcgtcgaggagatagatatcagcatcttggtagagtgc |
39505543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 5282663 - 5282709
Alignment:
| Q |
224 |
gcatcaagtgcactaaaagggtcatcaaggagataaacatcagcatc |
270 |
Q |
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| T |
5282663 |
gcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc |
5282709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 5351569 - 5351607
Alignment:
| Q |
232 |
tgcactaaaagggtcatcaaggagataaacatcagcatc |
270 |
Q |
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| T |
5351569 |
tgcactaaaagggtcatcaagaagatatacatcagcatc |
5351607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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