View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12831_low_6 (Length: 247)
Name: NF12831_low_6
Description: NF12831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12831_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17644706 - 17644935
Alignment:
| Q |
1 |
gtttaattaagaacattacaggaaatgaatcaaatgcatcaaggcaaccggttccggttcagttttcgcctccagtaccaagacatcatgtgcatcctat |
100 |
Q |
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| T |
17644706 |
gtttaattaagaacattacaggaaatgaatcaaatgcatcaaggcaaccagttccggttcagttttcgcctccagtaccaagacatcatgtgcatcctat |
17644805 |
T |
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| Q |
101 |
ttatggtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagactcaacgccgctgaacatt |
200 |
Q |
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| T |
17644806 |
ttctggtcctctccttgttaacaattcacaaagtaatctttctgggtttccagtatctacttccatgagaaactttcaagactcaacgccgctgaacatt |
17644905 |
T |
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| Q |
201 |
ggtaattcaagaggtaaccagttccaacct |
230 |
Q |
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| T |
17644906 |
ggtaattcaagaggtaaccagttccaacct |
17644935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 17631290 - 17631430
Alignment:
| Q |
83 |
acatcatgtgcatcctatttatggtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagac |
182 |
Q |
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| T |
17631290 |
acatcctgtgcagcctattactggtaatcctcttgttgacaatccacggagtaatcttgttgagtttccaatatctgcttcgatgagaaactctcaagac |
17631389 |
T |
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| Q |
183 |
tcaacgccgctgaacattggtaattcaagaggtaaccagtt |
223 |
Q |
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| T |
17631390 |
ttattgccgctaaacattggtaattcaggaggtaatcagtt |
17631430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 17645336 - 17645479
Alignment:
| Q |
82 |
gacatcatgtgcatcctatttatggtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaaga |
181 |
Q |
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| T |
17645336 |
gacatcatgtgcaacctattactcgtccttctcttgtttacaattcacagaataatcttgttgagtctccagtttcttctttcatgagaaactttcaaga |
17645435 |
T |
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| Q |
182 |
ctcaacgccgctgaacattggtaattcaagaggtaaccagttccaac |
228 |
Q |
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| T |
17645436 |
tccaa---cattgaacttgggtaattcaagaggtaaccagtttcaac |
17645479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 17604737 - 17604847
Alignment:
| Q |
113 |
tcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagaaactttcaagactcaacgccgctgaacattggtaattcaaga |
212 |
Q |
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| T |
17604737 |
tcttgttgaaaattcacaaagtaatattgttgagtttccaatatcttctttgatgagaaactctcaagacctatttccgctgaacattggtaattcagga |
17604836 |
T |
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| Q |
213 |
ggtaaccagtt |
223 |
Q |
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| T |
17604837 |
ggtaatcagtt |
17604847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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