View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12831_low_7 (Length: 237)

Name: NF12831_low_7
Description: NF12831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12831_low_7
NF12831_low_7
[»] chr3 (4 HSPs)
chr3 (1-230)||(11005992-11006221)
chr3 (1-230)||(11015555-11015784)
chr3 (1-230)||(11024567-11024796)
chr3 (79-230)||(47452021-47452172)
[»] chr6 (2 HSPs)
chr6 (3-135)||(21015711-21015849)
chr6 (3-50)||(21979679-21979726)
[»] chr4 (22 HSPs)
chr4 (6-143)||(37827029-37827172)
chr4 (1-46)||(48902929-48902974)
chr4 (156-216)||(45366409-45366469)
chr4 (3-46)||(48735423-48735466)
chr4 (3-45)||(7237764-7237806)
chr4 (3-45)||(7771396-7771438)
chr4 (3-45)||(7790081-7790123)
chr4 (3-45)||(7877727-7877769)
chr4 (87-216)||(48870366-48870495)
chr4 (87-216)||(48886052-48886181)
chr4 (3-135)||(48891317-48891452)
chr4 (3-43)||(7908325-7908365)
chr4 (6-50)||(50669048-50669092)
chr4 (11-50)||(7813470-7813509)
chr4 (11-50)||(7822959-7822998)
chr4 (3-46)||(48147758-48147801)
chr4 (6-53)||(48156465-48156512)
chr4 (3-50)||(48170603-48170650)
chr4 (88-215)||(48863054-48863181)
chr4 (3-50)||(49048614-49048661)
chr4 (3-50)||(50250822-50250869)
chr4 (6-55)||(48852654-48852703)
[»] chr8 (2 HSPs)
chr8 (3-50)||(12200300-12200347)
chr8 (3-50)||(12444728-12444775)
[»] chr7 (1 HSPs)
chr7 (3-50)||(48883794-48883841)
[»] chr1 (2 HSPs)
chr1 (3-46)||(24367144-24367187)
chr1 (6-46)||(24310168-24310208)
[»] chr5 (2 HSPs)
chr5 (5-46)||(29696203-29696244)
chr5 (87-132)||(42562453-42562498)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 11005992 - 11006221
Alignment:
Q  1 ataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11005992 ataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgtct 11006091  T
Q  101 gagacgtccagtggatggattccataggtagatgtgtaaagaataagtcaaaacaataaatcctcgacatgaacttttaatttcaagattagaataagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006092 gagacgtccagtggatggattccataggtagatgtgtaaagaataagtcaaaacaataaatcctcgacatgaacttttaatttcaagattagaataagat 11006191  T
Q  201 tcgggaagcataaaattaaagttcagtgaa 230  Q
    |||||||| |||||||||||||||||||||    
T  11006192 tcgggaagtataaaattaaagttcagtgaa 11006221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 11015555 - 11015784
Alignment:
Q  1 ataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||| |||||||||||||||| ||||||||||||||||||    
T  11015555 ataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaattggaagcaggaaaaggtatttgttt 11015654  T
Q  101 gagacgtccagtggatggattccataggtagatgtgtaaagaataagtcaaaacaataaatcctcgacatgaacttttaatttcaagattagaataagat 200  Q
    | || ||||||| |||||||||||||||||||||| | ||||| |||||||||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  11015655 gtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaagactagaataagat 11015754  T
Q  201 tcgggaagcataaaattaaagttcagtgaa 230  Q
    || ||| |||||||||||| ||||||||||    
T  11015755 tctggaggcataaaattaaggttcagtgaa 11015784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 11024567 - 11024796
Alignment:
Q  1 ataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||  ||    
T  11024567 ataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatgaatatttggcatctaaattggaaggaggaaatggtattttctt 11024666  T
Q  101 gagacgtccagtggatggattccataggtagatgtgtaaagaataagtcaaaacaataaatcctcgacatgaacttttaatttcaagattagaataagat 200  Q
    | || |||  || |||||||||||||| || ||||   ||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||    
T  11024667 gtgatgtctggtcgatggattccatagataaatgttggaagaacaagtcaaaactataaatcctctacaagaacttttaatttcaagattagaataagat 11024766  T
Q  201 tcgggaagcataaaattaaagttcagtgaa 230  Q
    ||||||||||||||||||| ||| ||||||    
T  11024767 tcgggaagcataaaattaaggttaagtgaa 11024796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 230
Target Start/End: Original strand, 47452021 - 47452172
Alignment:
Q  79 aaggaggaaaaggtatttgtttgagacgtccagtggatggattccataggtagatgtgtaaagaataagtcaaaacaataaatcctcgacatgaactttt 178  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||||||| |||||||| | ||||| || | ||||  ||||| |||| |||||||| |||    
T  47452021 aaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaaccttt 47452120  T
Q  179 aatttcaagattagaataagattcgggaagcataaaattaaagttcagtgaa 230  Q
    ||||||||||||| | | ||||| |||||||| |||||||| |||| |||||    
T  47452121 aatttcaagattatactcagattggggaagcaaaaaattaaggttcggtgaa 47452172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 21015849 - 21015711
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattgga------aggaggaaaaggtattt 96  Q
    |||||||| ||||||||| ||||  ||||||||||||||||||||||| |||||| ||| ||  || ||||||  ||      |||||  ||||||||||    
T  21015849 accaccaaataatcatctgttgatgggtcatacccaaaaccatatagataacatatataattgacacctaaatatgaactattaggagacaaaggtattt 21015750  T
Q  97 gtttgagacgtccagtggatggattccataggtagatgt 135  Q
    ||||| ||  || ||||||||||||||||||||||||||    
T  21015749 gtttgtgaactctagtggatggattccataggtagatgt 21015711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 21979679 - 21979726
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||    
T  21979679 accaccaagtaatcatttcttgactggtcataaccaaaaccatataga 21979726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 37827029 - 37827172
Alignment:
Q  6 accaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattgga------aggaggaaaaggtatttgtt 99  Q
    ||||||||||||||||| || |||||||| ||||||||||||||| |||  | ||| | | | || ||||||||      |||||  || ||||||||||    
T  37827029 accaagtaatcatctctagactggtcataaccaaaaccatatagagaaccgaaataatattcttccaaattggagttaaaaggagacaagggtatttgtt 37827128  T
Q  100 tgagacgtccagtggatggattccataggtagatgtgtaaagaa 143  Q
    || ||  |||||||||||||||||||| |||||||| |||||||    
T  37827129 tgtgaaatccagtggatggattccatatgtagatgtttaaagaa 37827172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 48902974 - 48902929
Alignment:
Q  1 ataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 46  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||    
T  48902974 ataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 48902929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 45366409 - 45366469
Alignment:
Q  156 ataaatcctcgacatgaacttttaatttcaagattagaataagattcgggaagcataaaat 216  Q
    ||||| |||| |||||||| |||||||| ||||| |||||||||||||||||||| |||||    
T  45366409 ataaagcctctacatgaacctttaatttgaagatcagaataagattcgggaagcagaaaat 45366469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 48735423 - 48735466
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 46  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  48735423 accaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 7237764 - 7237806
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccat 45  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  7237764 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 7771438 - 7771396
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccat 45  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  7771438 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 7790123 - 7790081
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccat 45  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  7790123 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 7877769 - 7877727
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccat 45  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  7877769 accaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 48870495 - 48870366
Alignment:
Q  87 aaaggtatttgtttgagacgtccagtggatggattccataggtagatgtgtaaagaataagtcaaaacaataaatcctcgacatgaacttttaatttcaa 186  Q
    ||||||||||||||| ||  ||| |||||||||||||||||||||| |  |  || | ||  ||| |  ||||| |||| |||||||| |||||||||||    
T  48870495 aaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttcaa 48870396  T
Q  187 gattagaataagattcgggaagcataaaat 216  Q
     || | |||||||||| ||||||| |||||    
T  48870395 aatcataataagattcaggaagcagaaaat 48870366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 48886181 - 48886052
Alignment:
Q  87 aaaggtatttgtttgagacgtccagtggatggattccataggtagatgtgtaaagaataagtcaaaacaataaatcctcgacatgaacttttaatttcaa 186  Q
    ||||||||||||||| ||  ||| |||||||||||||||||||||| |  |  || | ||  ||| |  ||||| |||| |||||||| |||||||||||    
T  48886181 aaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttcaa 48886082  T
Q  187 gattagaataagattcgggaagcataaaat 216  Q
     || | |||||||||| ||||||| |||||    
T  48886081 aatcataataagattcaggaagcagaaaat 48886052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 48891452 - 48891317
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaa------ggaggaaaaggtattt 96  Q
    |||||||| |||||||||||| | |   |||||| ||||||||||||| |||||| ||| || ||||||||  | |||      ||||  ||||||||||    
T  48891452 accaccaactaatcatctcttaact---catacctaaaaccatatagataacataaatagttggcatctaacctcgaatcaataggagacaaaggtattt 48891356  T
Q  97 gtttgagacgtccagtggatggattccataggtagatgt 135  Q
    ||||| || |||||||||||||||||||||  |||||||    
T  48891355 gtttgtgaagtccagtggatggattccatacatagatgt 48891317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 7908365 - 7908325
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaacc 43  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  7908365 accaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 50669092 - 50669048
Alignment:
Q  6 accaagtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||    
T  50669092 accaagtaatcatctcttgaccggtcataaccaaaaccatataga 50669048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 7813509 - 7813470
Alignment:
Q  11 gtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7813509 gtaatcatctcttgactggtcataaccaaaaccatataga 7813470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 7822998 - 7822959
Alignment:
Q  11 gtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7822998 gtaatcatctcttgactggtcataaccaaaaccatataga 7822959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 48147758 - 48147801
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 46  Q
    |||||||||||||||||| || | ||||||||||||||||||||    
T  48147758 accaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 48156465 - 48156512
Alignment:
Q  6 accaagtaatcatctcttgaatggtcatacccaaaaccatatagacaa 53  Q
    |||||||||||||||||| | || ||||||||||| ||||||||||||    
T  48156465 accaagtaatcatctcttaattgatcatacccaaatccatatagacaa 48156512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 48170603 - 48170650
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    ||||| ||||||||||||||| | || |||||||||||||||||||||    
T  48170603 accactaagtaatcatctcttaactgatcatacccaaaaccatataga 48170650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 48863181 - 48863054
Alignment:
Q  88 aaggtatttgtttgagacgtccagtggatggattccataggtagatgtgtaaagaataagtcaaaacaataaatcctcgacatgaacttttaatttcaag 187  Q
    |||||||||||||  ||  ||| ||||||||||||||||||||||||| | ||| | |  | ||||||||||| |||| | |||||  |||||| | |||    
T  48863181 aaggtatttgtttctgagctccggtggatggattccataggtagatgtttgaagcacagttgaaaacaataaagcctctagatgaagctttaatattaag 48863082  T
Q  188 attagaataagattcgggaagcataaaa 215  Q
    ||  | ||||| ||| ||||||||||||    
T  48863081 atctgtataaggttctggaagcataaaa 48863054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 49048614 - 49048661
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    |||||||| ||||||||| ||||  |||||||||||||||||||||||    
T  49048614 accaccaaataatcatctgttgatgggtcatacccaaaaccatataga 49048661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 50250822 - 50250869
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    |||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  50250822 accaccaaataatcatctgttgagtggtcataaccaaaaccatataga 50250869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 48852703 - 48852654
Alignment:
Q  6 accaagtaatcatctcttgaatggtcatacccaaaaccatatagacaaca 55  Q
    ||||||||||||||  ||||  ||||||||||||||||||||||| ||||    
T  48852703 accaagtaatcatcggttgacgggtcatacccaaaaccatatagataaca 48852654  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 12200347 - 12200300
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  12200347 accaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 12200300  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 12444775 - 12444728
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  12444775 accaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 12444728  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 48883841 - 48883794
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 50  Q
    ||||||| |||||||||||||||  ||||||| |||||||||||||||    
T  48883841 accaccatgtaatcatctcttgacgggtcataaccaaaaccatataga 48883794  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 24367187 - 24367144
Alignment:
Q  3 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 46  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  24367187 accaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 24310208 - 24310168
Alignment:
Q  6 accaagtaatcatctcttgaatggtcatacccaaaaccata 46  Q
    |||||||||||||||||||| | |||||| |||||||||||    
T  24310208 accaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 29696244 - 29696203
Alignment:
Q  5 caccaagtaatcatctcttgaatggtcatacccaaaaccata 46  Q
    |||||||||||||||| |||| | ||||||||||||||||||    
T  29696244 caccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 42562453 - 42562498
Alignment:
Q  87 aaaggtatttgtttgagacgtccagtggatggattccataggtaga 132  Q
    ||||||||||||||| || ||||  |||||||||||||||||||||    
T  42562453 aaaggtatttgtttgtgatgtccgatggatggattccataggtaga 42562498  T

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