View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_high_11 (Length: 313)
Name: NF12832_high_11
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_high_11 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 24222571 - 24222663
Alignment:
| Q |
19 |
atcaagttgtgtgggattagtggtgaaaatagagtgtagttgaagagaatcgagtgggtaagatattacagtaaactctttgcttttgataaa |
111 |
Q |
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| T |
24222571 |
atcaagttgtgtgggattagtggtgaaaatagagtgtagttgaagagaatcgagtgggtaagatattacagtaaactctttgcttttgataaa |
24222663 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 24512495 - 24512441
Alignment:
| Q |
27 |
gtgtgggattagtggtgaaaatagagtgtagttgaagagaatcgagtgggtaaga |
81 |
Q |
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| T |
24512495 |
gtgtgggttcagaggtgaaaatagagtgaagttgaagagaatcgagtggataaga |
24512441 |
T |
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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 25478048 - 25477990
Alignment:
| Q |
23 |
agttgtgtgggattagtggtgaaaatagagtgtagttgaagagaatcgagtgggtaaga |
81 |
Q |
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| T |
25478048 |
agttgtgtgggattagaggtgaaaatagcgtcgagatgaagagagtcgagtgggtaaga |
25477990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 24233981 - 24234057
Alignment:
| Q |
23 |
agttgtgtgggattagtggtgaaaatagagtgtagttgaagagaatcgagtgggtaagatattacagtaaactcttt |
99 |
Q |
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| T |
24233981 |
agttgtgtgggattagaagtgaaaatagagtcgagttgaagagagtcgaatggataagaagtcacagttaactcttt |
24234057 |
T |
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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 40978 - 41051
Alignment:
| Q |
26 |
tgtgtgggattagtggtgaaaatagagtgtagttgaagagaatcgagtgggtaagatattacagtaaactcttt |
99 |
Q |
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| T |
40978 |
tgtgtgggattagaggtaaaaatagagtcgagttgaagagagtcgaatggataagacattacagttagctcttt |
41051 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 1421767 - 1421831
Alignment:
| Q |
23 |
agttgtgtgggattagtggtgaaaatagagtgtagttgaagagaatcgagtgggtaagatattac |
87 |
Q |
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| T |
1421767 |
agttgtgtgggattggaggtgaaaattgagtcgagttgaagagaatcgaatggataagacattac |
1421831 |
T |
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