View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_high_24 (Length: 235)
Name: NF12832_high_24
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 34440675 - 34440875
Alignment:
| Q |
10 |
ggagcacagatgcaattgtctttgacagcgatcaatcgtatggaactcctagctattggacgcaggttctgtttaaagagtcaaatggagcaacttttat |
109 |
Q |
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| T |
34440675 |
ggagcccagatgcaattgtctttgacagcgatcaatcgtatggaactcctagctattggacgcaggttctgtttaaagagtcaaatggagcaacttttat |
34440774 |
T |
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| Q |
110 |
caactcacaacttcaaacacctgatcccggaatgctggctgcatctgccattctttgcaaaaatcctcaaaataatgacactcacttaaaaataaaggta |
209 |
Q |
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| T |
34440775 |
caactcacaacttcaaacacctgatcccggaatgctggctgcatctgcaattctttgcaaaaatcctcaaaataatgacactcacttaaaaataaaggta |
34440874 |
T |
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| Q |
210 |
a |
210 |
Q |
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| T |
34440875 |
a |
34440875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 34450648 - 34450842
Alignment:
| Q |
16 |
cagatgcaattgtctttgacagcgatcaatcgtatggaactcctagctattggacgcaggttctgtttaaagagtcaaatggagcaacttttatcaactc |
115 |
Q |
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||||||||||||||||| |||| ||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||| |
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| T |
34450648 |
cagatgcaattgtctttagcagcaatcaagtttatgggactcctagctattgggtgacatatctgtttaaagagtcaaatggagcaacatttctcaactc |
34450747 |
T |
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| Q |
116 |
acaacttcaaacacctgatcccggaatgctggctgcatctgccattctttgcaaaaatcctcaaaataatgacactcacttaaaaataaaggtaa |
210 |
Q |
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| T |
34450748 |
aacacttcaaacaacagatcccggaacactggctgcatctgcaattcttgtcaaagatcctcaaaataaaaatacttacttaaaaataaaggtaa |
34450842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 34466724 - 34466918
Alignment:
| Q |
16 |
cagatgcaattgtctttgacagcgatcaatcgtatggaactcctagctattggacgcaggttctgtttaaagagtcaaatggagcaacttttatcaactc |
115 |
Q |
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||||||||||||| ||| ||||| ||||| | ||||| ||||||||||||||| | | ||||||||||||||||||||||||| ||| ||||||| |
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| T |
34466724 |
cagatgcaattgtttttaacagctatcaagcttatgggactcctagctattgggtgacatatatgtttaaagagtcaaatggagcaacatttctcaactc |
34466823 |
T |
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| Q |
116 |
acaacttcaaacacctgatcccggaatgctggctgcatctgccattctttgcaaaaatcctcaaaataatgacactcacttaaaaataaaggtaa |
210 |
Q |
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| T |
34466824 |
acaacttcaaacacctgatcctggctcactgattgcatctgcaattctttgccaaagtcctcaaaataatagtacttacttgaaaataaaggtaa |
34466918 |
T |
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