View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_high_5 (Length: 445)
Name: NF12832_high_5
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_high_5 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 28945 - 28519
Alignment:
| Q |
1 |
aggagatgttcgagaaactaccggaaacggtgtaaatttcttctatgatggacaaggtttcatgtctgttcaattgactagaacagatgcaaacattgtg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28945 |
aggagacgttcgagaaactaccggaaacggtgtaaatttcttctatgatggacaaggtttcatgtctgttcaattgactagaacagatgcaaacattgtg |
28846 |
T |
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| Q |
101 |
ttctatgatgtttctggccaggttttgcacaaaaccacttcatcaaagcagctacattcttccatataaagttcagaacatgtataagatcgatagaaag |
200 |
Q |
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| T |
28845 |
ttctatgatgtttctggccaggttttgcacaaaaccacttcatcaaagcagctacattcttccatataaagttcagaacatgtataagatcgatagaaag |
28746 |
T |
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| Q |
201 |
aaaatgagattaaaaaggttttggggactataggattggttttcaaattcaagtcaccaattcttgaatacattactataagttgtatatatatttctat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28745 |
aaaatgagattaaaaaggttttggggactataggattggtttttaaattcaagtcaccaattcttgaatacattactataagttgtatatatatttctat |
28646 |
T |
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| Q |
301 |
tgcttaggattttcatgatttgaaattttgaagttctatttcttggtatattgtattttgtaaataaatattttgaatggatgagttttactagaagttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28645 |
tgcttaggattttcatgatttgaaattttgaagttctatttcttggtatattgtattttgtaaataaatattttgaatggatgagttttactagaagttc |
28546 |
T |
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| Q |
401 |
atgtgttttattttggattttagaatt |
427 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28545 |
atgtgttttattttggattttagaatt |
28519 |
T |
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