View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_high_7 (Length: 426)
Name: NF12832_high_7
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 41553404 - 41553813
Alignment:
| Q |
1 |
agaaaggtgctccaaggaaccaaagtggttgccaaatattcctcaagaaggaatgtgctcgactgaaagctgatcatcgggacattggtgtcagaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41553404 |
agaaaggtgctccaaggaaccaaagtggttaccaaatattcctcaagaaggaatgtgctcgactgaaagctgatcatcgggacattggtgtcagaaaaca |
41553503 |
T |
|
| Q |
101 |
aatggctattgatgcttggaagaaaatgtcagacattgataaaaaggtacaatataatgaaattgacataataatatctattaaaagtcgaaagatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41553504 |
aatggctattgatgcttggaagaaaatgtcagacattgataaaaaggtacaatataatgaaattgacataataatatctattaaaagtcgaaagatttat |
41553603 |
T |
|
| Q |
201 |
agttttgcaattagcctatagttggtttatttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaaggnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41553604 |
agttttgcaattagcctatagttggtttatttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaaggaaaa |
41553703 |
T |
|
| Q |
301 |
nnncaaagaagcaatgatcattgacattaaacagaagagcacccaagatcttaagagggatgaaaagaggcctaatgtgtgtggtgactactaatgttga |
400 |
Q |
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| T |
41553704 |
aaacaaagaagcaatgatcattgacattaaacagaagagcacccaagatcttaagagggatgaaaagaggcctaatgtgtgtggtgactactaatgttga |
41553803 |
T |
|
| Q |
401 |
acttcacaag |
410 |
Q |
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| T |
41553804 |
acttcacaag |
41553813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 34256855 - 34257018
Alignment:
| Q |
36 |
atattcctcaagaaggaatgtgctcgactgaaagctgatcatcgggacattggtgtcagaaaac------aaatggctattgatgcttggaagaaaatgt |
129 |
Q |
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|||||||||||| |||||||||||||||| |||||| |||||| |||| | |||| |||||| | |||||||||||||||||||| || ||| |
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| T |
34256855 |
atattcctcaagcaggaatgtgctcgacttaaagctaatcatccggacgtaggtggaagaaaaatcatagacatggctattgatgcttggaataagttgt |
34256954 |
T |
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| Q |
130 |
cagacattgataaaaaggtacaatataatgaaattgacataataatatctattaaaagtcgaaag |
194 |
Q |
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| T |
34256955 |
cagacaatgagaaacgggtatagta-aatgaatttgagataataatatcgattaaaagtcgaaag |
34257018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 34257379 - 34257445
Alignment:
| Q |
230 |
tttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaagg |
296 |
Q |
| |
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| T |
34257379 |
tttgaaatttgccacttctaattacatttcatgtagccatatgaagaggaaagcatgaagataaagg |
34257445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 34257472 - 34257530
Alignment:
| Q |
335 |
aagagcacccaagatcttaagagggatgaaaagaggcctaatgtgtgtggtgactacta |
393 |
Q |
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|
| T |
34257472 |
aagagcactgaagatcttaatagggatgaagagagacctattgtgtgtggtgactacta |
34257530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 34257190 - 34257334
Alignment:
| Q |
33 |
caaatattcctcaagaaggaatgtgctcgactgaaagctgatcatcgggacattggtgtcagaaaacaaatggctattgatgcttggaagaaaatgtcag |
132 |
Q |
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||||||||||||||| | ||||| ||| |||||||||||||||||| | |||| |||||||| | |||||||||||||||||||| ||||| |
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| T |
34257190 |
caaatattcctcaagcatgaatgcgctagactgaaagctgatcatcagtttcaaggtgacagaaaactcaaggctattgatgcttggaagatgatgtccc |
34257289 |
T |
|
| Q |
133 |
acattgataaaaaggtacaatataatgaaattgacataataatatc |
178 |
Q |
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| | || ||| ||||| ||| ||||||||||||||||||||||| |
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| T |
34257290 |
ccttggaaaaactggtacgata-aatgaaattgacataataatatc |
34257334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 364
Target Start/End: Original strand, 37558206 - 37558376
Alignment:
| Q |
195 |
atttatagttttgcaattagcctatagttggtttatttgaaatttgcaacttctaattgcttttc-atttagccatatgtagaggaaagcaagaaaataa |
293 |
Q |
| |
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||||||| ||||||||||||||| || || |||| ||||||| || | | |||||||| ||||| || ||||||||||| |||||||||| ||| |||| |
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| T |
37558206 |
atttatatttttgcaattagcctctactttgtttgtttgaaacttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataa |
37558305 |
T |
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| Q |
294 |
aggnnnnnnncaaagaagcaatgatcattgacattaaacagaagagcacccaagatcttaagagggatgaa |
364 |
Q |
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||| || ||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||| |
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| T |
37558306 |
aggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagaaggatgaa |
37558376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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