View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_high_9 (Length: 334)
Name: NF12832_high_9
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 26046876 - 26046567
Alignment:
| Q |
1 |
gtgagtttgattttgtattctctggtgaaggctcatttggaaagtcggcgaagccggcggtgtttgcggcggagattgctcggacaatgaaacaaggtgg |
100 |
Q |
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| T |
26046876 |
gtgagtttgattttgtattctccggtgaaggctcgtttaggaagtcggcgaagccggcggtgtttgcagcggagattgctcggacgatgaaacacggtgg |
26046777 |
T |
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| Q |
101 |
attcgcggtttttcatttcacaaaccgtaaagatacgtatagtttcaattcatttcttgatttgtttcattgtttcaaagtagtgaaattgcaggtgtta |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26046776 |
attcgcggtttttcatttcacaaaccgtaaggatacgtatagtttcaattcatttcttgatttgtttcattgtttcaaagtagtgaaattgcatgtgtta |
26046677 |
T |
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| Q |
201 |
gaagggtttgattcttcaatgccttatatacatgaaactgttttgaagaatgagtgtgttgattatgaaaaatttgatactgattattattcgaattcga |
300 |
Q |
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| T |
26046676 |
gaagggtttgattcttcaatgccttatatacatgaaactgttttgaagaatgagtgtgttgattatgaaaaatttgatagtgattattattcgagttcga |
26046577 |
T |
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| Q |
301 |
atggaaattg |
310 |
Q |
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|||||||||| |
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| T |
26046576 |
atggaaattg |
26046567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 138 - 315
Target Start/End: Original strand, 21219842 - 21220019
Alignment:
| Q |
138 |
tatagtttcaattcatttcttgatttgtttcattgtttcaaagtagtgaaattgcaggtgttagaagggtttgattcttcaatgccttatatacatgaaa |
237 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||| |
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| T |
21219842 |
tatagtttcaatttatttcttgatttgtttcgttgtttcaaagtagtgaaattgcatgtgtaagaagtgtttgattcttcagtgccttatatacatgaaa |
21219941 |
T |
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| Q |
238 |
ctgttttgaagaatgagtgtgttgattatgaaaaatttgatactgattattattcgaattcgaatggaaattgctatg |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
21219942 |
ctgtgttgaagaatgagtgtgttgattatgaaaaatttgatagtgattattattcgaattcgaatggaaattgttatg |
21220019 |
T |
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