View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_1 (Length: 988)
Name: NF12832_low_1
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 8823946 - 8823521
Alignment:
| Q |
18 |
gatgaaacctgctttacaaaattcaggttcttcaccctgcctgctttacaaaaatttaccatgaaatttgtaataatcttaacattttggtaaataaaga |
117 |
Q |
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| T |
8823946 |
gatgaaacctgctttacaaaattcaggttcttcaccctgcctgctttacaaaaatttaccatgaaatttgtaataatcttaacattttggtaaataaaga |
8823847 |
T |
|
| Q |
118 |
catatttataattatcttattataagtatgagagcttgaaaagtttgttacccttgggtgtatccaacaggtatggaatattaatgatcttagttgcatc |
217 |
Q |
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| T |
8823846 |
catatttataattatcttattataagtatgagagcttgaaaagtttgttacccttgggtgtatccaacaggtatggaatattaatgatcttagttgcatc |
8823747 |
T |
|
| Q |
218 |
tacatgccctttctcaaactcttccaccgtcctacaaatcaccaaaaggtttagatttagctttgaattcaatatgtttttagtctttaattaactagaa |
317 |
Q |
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| T |
8823746 |
tacatgccctttctcaaactcttccaccgtcctacaaatcaccaaaagatttagatttagctttgaattcaatatgtttttagtctttaattaactagaa |
8823647 |
T |
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| Q |
318 |
ttttgttttaatctatatgcca--nnnnnnnnatataaaaacatgcagtttttaattctttatccaaagggaagaaagacaggaaagcgtctcatctaat |
415 |
Q |
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| T |
8823646 |
ttttgttttaatctatatgccatttttttattatataaaaacatgcagtttttaattctttatccaaagggaagaaagacaagaaagtgtctcatctaat |
8823547 |
T |
|
| Q |
416 |
ttgactaaccacgatatgatatattt |
441 |
Q |
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| T |
8823546 |
ttgactaactacgatatgatatattt |
8823521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 627 - 829
Target Start/End: Complemental strand, 8823379 - 8823177
Alignment:
| Q |
627 |
taggtttacctaacatcaagataaatgtgaccggtctggatgagattcttggctgcgtgtacatcaatagtgacaacctttgctcctgagctacacaaga |
726 |
Q |
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| T |
8823379 |
taggtttacctaacatcaagataaatgtgaccggtctggatgagattcttggctgcgtgtacatcaatggtgacaacctttgctcctgagctacacaaga |
8823280 |
T |
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| Q |
727 |
caaaaacaagaagaagaagaaacgccaaacaacgaggtaacaagtttgctgaaacagcagccattgttgtatatggtttgtaacttgcaagctagttaat |
826 |
Q |
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| T |
8823279 |
caaaaacaagaagaagaaaaaacgccaaacaacgaggtaacaagtttgctgaaacagcagccattgttgtatatggtttgtaacttgcaagctagttaat |
8823180 |
T |
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| Q |
827 |
ctt |
829 |
Q |
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||| |
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| T |
8823179 |
ctt |
8823177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 862 - 974
Target Start/End: Complemental strand, 8823144 - 8823032
Alignment:
| Q |
862 |
gtgatttttactaaagcatttaagttcagttgaagtatatgaaaaacacaataaatgtaagtttatttatatgtaagcagcatgttggtttggtttgaaa |
961 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8823144 |
gtgatttttactaaagcatttaagttcagttgaagtatatgaaaaacacaataaatgtaagtttatttatatgtaagcagcatgttggtttggtttgaaa |
8823045 |
T |
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| Q |
962 |
tctggtgtctctg |
974 |
Q |
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| T |
8823044 |
tctggtgtctctg |
8823032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 489 - 581
Target Start/End: Complemental strand, 8823517 - 8823425
Alignment:
| Q |
489 |
ttagaggtggtggaccatatcaaatctttatctacgggaaagttgtgataaagagattattttctcgatttgttgattcttttgtttgtttat |
581 |
Q |
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| T |
8823517 |
ttagaggtggtggaccgtatcaaatctttatctacgggaaagttgtgataaagagatcattttctcgatttgttgattcttttgtttgtttat |
8823425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 31897389 - 31897480
Alignment:
| Q |
165 |
ttacccttgggtgtatccaacaggtatggaatattaatgatcttagttgcatctacatgccctttctcaaactcttccaccgtcctacaaat |
256 |
Q |
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||||||| |||||||| |||| ||||| ||| ||||||||||| || |||||| |||||||||| ||||||||||||||||||| |||| |
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| T |
31897389 |
ttaccctcgggtgtattgaacatgtatgcaatgttaatgatcttctctgaatctacgtgccctttctgaaactcttccaccgtcctataaat |
31897480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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