View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_14 (Length: 354)
Name: NF12832_low_14
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 27256485 - 27256810
Alignment:
| Q |
16 |
gacatcaaggtgcctgcaatatggttcaaaatgagttgatgaaatggattaagccaagtgcaggaaaatttaagtgtaaggtagacacctctttttctga |
115 |
Q |
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| T |
27256485 |
gacatcaaggtgcctgcaatatgggtcaaaatgagttgatgaaatggattaatccaagtgcaggaaaatttaagtgtaaggtagacacctctttttctga |
27256584 |
T |
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| Q |
116 |
ttcacttaataaagttgggtctggagcatgcatcagggatgcaacaggtaattatgtcattgccataactgaatgggtgaagcctattttggatgtgaat |
215 |
Q |
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| T |
27256585 |
ttcacttaataaagttaggtctggagcatgtatcacggatgcagcaggtaattatgtcattgccataactgaatgggtgaagcctattttggatgtggat |
27256684 |
T |
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| Q |
216 |
ttgcgagaagatttgagccttctatctgtcatgcaatgggcaagagatcttaatttggtgaacctggattttgaaacagattccaaactggtgactgata |
315 |
Q |
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||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
27256685 |
ttgggagaagctttgagccttctacctgtcatgcaatgggcaagagatcttaatttggtgaacatggattttgaaacagattccaaaccggtgactgata |
27256784 |
T |
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| Q |
316 |
gtatttacaacaataactatggtgtc |
341 |
Q |
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| T |
27256785 |
gtatttacaacaataatgatggtgtc |
27256810 |
T |
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