View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_16 (Length: 329)
Name: NF12832_low_16
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 17428941 - 17428625
Alignment:
| Q |
1 |
atcagatactagtaaaacatgtcgacattgataataatttaaaaaattaactaattcaatgcaatcacatgtgttagtgtcataacgggcacttacgagt |
100 |
Q |
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|||||||||| ||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17428941 |
atcagatacttataaaacatgtcaactttggtaataatttaaaaaattaactaattgaatgcaatcacatgtgttagtgtcataacgggcacttacgagt |
17428842 |
T |
|
| Q |
101 |
gtcaaacacaggcttctgatcaaaggtgtctgttctaaattccttccaacatttggaaattaaggattatgctctattttgtaaaagagaaattagaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17428841 |
gtcaaacacaggcttctgatcaaaggtgtctgttgtaaattccttccaacatttggaaattaaggattatgctttattttgtaaaagagaaattagaaat |
17428742 |
T |
|
| Q |
201 |
tctgaaatttaaattaattgtaggtacttagatcaacttggattagcatccagatacaacactaaggtctattgcaggcagaccttaactggaggaaact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
17428741 |
tctgaaatttaaattaattgtaggtacttagatcaacttggattagcatccagatacaatactaaggtctattgcaggcagaccttaattggaggaaact |
17428642 |
T |
|
| Q |
301 |
atggccttcttgatgtc |
317 |
Q |
| |
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||||||||||| ||||| |
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| T |
17428641 |
atggccttcttaatgtc |
17428625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 157 - 317
Target Start/End: Original strand, 45389434 - 45389594
Alignment:
| Q |
157 |
aaattaaggattatgctctattttgtaaaagagaaattagaaattctgaaatttaaattaattgtaggtacttagatcaacttggattagcatccagata |
256 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45389434 |
aaattaatgattatgctttattttgtaaaagagaaattagaaattctgaaatttaaattaattgtaggtacttagatcaacttggattagcatccagata |
45389533 |
T |
|
| Q |
257 |
caacactaaggtctattgcaggcagaccttaactggaggaaactatggccttcttgatgtc |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
45389534 |
caacactaaggtctattgcaggcagaccttaattggaggaaactatggccttcttaatgtc |
45389594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 45353603 - 45353553
Alignment:
| Q |
201 |
tctgaaatttaaattaattgtaggtacttagatcaacttggattagcatcc |
251 |
Q |
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|
|||||||||||| |||| |||| ||||||||||||||||||| |||||||| |
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| T |
45353603 |
tctgaaatttaagttaagtgtaagtacttagatcaacttggaatagcatcc |
45353553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 45363082 - 45363032
Alignment:
| Q |
201 |
tctgaaatttaaattaattgtaggtacttagatcaacttggattagcatcc |
251 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||| |||||||| |
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|
| T |
45363082 |
tctgaaatttaagttaagtgtaagtacttagatcaacttggaatagcatcc |
45363032 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 7212566 - 7212656
Alignment:
| Q |
220 |
gtaggtacttagatcaacttggattagcatccagatacaacactaaggtctattgcaggcagaccttaactggaggaaactatggccttct |
310 |
Q |
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||||||||||||||||||||||| | ||||||| ||||| ||||| || ||||| |||||||| |||| |||||| |||||||||||||| |
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| T |
7212566 |
gtaggtacttagatcaacttggaatggcatccaactacaatactaaagtttattgtaggcagacattaattggagggaactatggccttct |
7212656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 7205920 - 7206010
Alignment:
| Q |
220 |
gtaggtacttagatcaacttggattagcatccagatacaacactaaggtctattgcaggcagaccttaactggaggaaactatggccttct |
310 |
Q |
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|
||||||||||||||||||||||| | ||||||| ||||| ||||| || ||||| |||||| | |||| |||||| |||||||| ||||| |
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| T |
7205920 |
gtaggtacttagatcaacttggaatggcatccacctacaatactaaagtttattgtaggcagtcattaattggagggaactatggtcttct |
7206010 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 7199158 - 7199248
Alignment:
| Q |
220 |
gtaggtacttagatcaacttggattagcatccagatacaacactaaggtctattgcaggcagaccttaactggaggaaactatggccttct |
310 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| ||||| || || || ||||| |||||| | |||| |||||| |||||||| ||||| |
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| T |
7199158 |
gtaggtacttagatcaacttggaatggcatccacctacaataccaaagtttattgtaggcagtcattaattggagggaactatggtcttct |
7199248 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 4653169 - 4653088
Alignment:
| Q |
21 |
gtcgacattgataataatttaaaaaattaactaattcaatgcaatcacatgtgttagtgtcataacgggcacttacgagtgt |
102 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||| | | | |||||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
4653169 |
gtcgacatcaatgataatttgaaaaattatttaaatgagtacaatcacatgtgttagtgtcatgacgggcactgacgagtgt |
4653088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 23948384 - 23948450
Alignment:
| Q |
16 |
aacatgtcgacattgataataattt-aaaaaattaactaattcaatgcaatcacatgtgttagtgtc |
81 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| || ||||| |||| ||||| |||||| |||||| |
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| T |
23948384 |
aacatgtcgacactgataataatttgaaaaaatcaattaattgaatgtaatcatatgtgtcagtgtc |
23948450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 3749254 - 3749303
Alignment:
| Q |
25 |
acattgataataatttaaaaaattaactaattcaatgcaatcacatgtgt |
74 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
3749254 |
acatagataataatttaaaaaatgacataattcaatgcaatcagatgtgt |
3749303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 17407079 - 17407121
Alignment:
| Q |
25 |
acattgataataatttaaaaaattaactaattcaatgcaatca |
67 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||| |
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|
| T |
17407079 |
acattgataataatttaaaaaatgaaataattgaatgcaatca |
17407121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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