View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_2 (Length: 847)
Name: NF12832_low_2
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 749; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 1 - 833
Target Start/End: Complemental strand, 26046876 - 26046044
Alignment:
| Q |
1 |
gtgagtttgattttgtattctctggtgaaggctcatttggaaagtcggcgaagccggcggtgtttgcggcggagattgctcggacaatgaaacaaggtgg |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
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| T |
26046876 |
gtgagtttgattttgtattctccggtgaaggctcgtttaggaagtcggcgaagccggcggtgtttgcagcggagattgctcggacgatgaaacacggtgg |
26046777 |
T |
|
| Q |
101 |
attcgcggtttttcatttcacaaaccgtaaagatacgtatagtttcaattcatttcttgatttgtttcattgtttcaaagtagtgaaattgcaggtgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26046776 |
attcgcggtttttcatttcacaaaccgtaaggatacgtatagtttcaattcatttcttgatttgtttcattgtttcaaagtagtgaaattgcatgtgtta |
26046677 |
T |
|
| Q |
201 |
gaagggtttgattcttcaatgccttatatacatgaaactgttttgaagaatgagtgtgttgattatgaaaaatttgatactgattattattcgaattcga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
26046676 |
gaagggtttgattcttcaatgccttatatacatgaaactgttttgaagaatgagtgtgttgattatgaaaaatttgatagtgattattattcgagttcga |
26046577 |
T |
|
| Q |
301 |
atggaaattgttatgttccggggtataagaaagatttggttagaattgctgagccattgattgaaaaggaaccattgaagccttggattacattgaaaag |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26046576 |
atggaaattgttacgttccggggtataagaaagatttggttagaattgctgagccattgattgaaaaggaaccattgaagccttggattacattgaaaag |
26046477 |
T |
|
| Q |
401 |
gaatttgatgaatataaagtatctttcttcaatggttgatatgagtttcaaaaataggtatatatatgttgatgttggagctagaagctatggttctagt |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
26046476 |
aaatttgatgaatataaagtatctttcttcaatggttgatataagtttcaagaataggtatttatatgttgatgttggagctagaagctatggttctagt |
26046377 |
T |
|
| Q |
501 |
ataggatcttggtttaggaaacaatatcctaaacagaataagacatttcatgtgtatgcgattgaagccgataagcattttcataaggagtatgggttga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26046376 |
ataggatcttggtttaggaaacaatatcctaagcaaaataagacatttcatgtgtatgcgattgaagccgataagcattttcataaggagtatgggttga |
26046277 |
T |
|
| Q |
601 |
agaaagggcttactttggttccttatgctgcttgggtgaagaatgagactttagcgtttgagattcatcgtgatccgggggagcatgttgaggttaaagg |
700 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26046276 |
aaaaagggcttactttggttccttatgctgcttgggtgaagaatgagactttagctttcgagattcatcgtgatccgggggagcatgttgaggttaaagg |
26046177 |
T |
|
| Q |
701 |
aagggggatgggtaggattcaacctttgcggtcgatagggaaggggtttgatggggaggtggagaagataaagggatttgattttgcgaattggttgaag |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26046176 |
aagggggatgggtaggattcaacctttgcggtcgatagggaaggggtttgatggggaggtggagaagataaagggatttgattttgcgaattggttgaag |
26046077 |
T |
|
| Q |
801 |
aagacggtttcgaagaatgattttgttgtgatg |
833 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
26046076 |
aagacggtttcgaagaatgattttgttgtgatg |
26046044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 138 - 384
Target Start/End: Original strand, 21219842 - 21220085
Alignment:
| Q |
138 |
tatagtttcaattcatttcttgatttgtttcattgtttcaaagtagtgaaattgcaggtgttagaagggtttgattcttcaatgccttatatacatgaaa |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||| |
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| T |
21219842 |
tatagtttcaatttatttcttgatttgtttcgttgtttcaaagtagtgaaattgcatgtgtaagaagtgtttgattcttcagtgccttatatacatgaaa |
21219941 |
T |
|
| Q |
238 |
ctgttttgaagaatgagtgtgttgattatgaaaaatttgatactgattattattcgaattcgaatggaaattgttatgttccggggtataagaaagattt |
337 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
21219942 |
ctgtgttgaagaatgagtgtgttgattatgaaaaatttgatagtgattattattcgaattcgaatggaaattgttatg---ctgggtataagaaagattt |
21220038 |
T |
|
| Q |
338 |
ggttagaattgctgagccattgattgaaaaggaaccattgaagcctt |
384 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
21220039 |
gattagaattgttgagccattgattgaaaaggaaccattgaaacctt |
21220085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 347 - 648
Target Start/End: Original strand, 3696925 - 3697226
Alignment:
| Q |
347 |
tgctgagccattgattgaaaaggaaccattgaagccttggattacattgaaaaggaatttgatgaatataaagtatctttcttcaatggttgatatgagt |
446 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| ||||| || ||||| | |||| ||| ||||||||||||| ||||||||||||||||| || |
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|
| T |
3696925 |
tgctgaggaattgattgaagaggaaccattgaagccatggataactttgaagaagaatgtgaagaatataaagtatgcatcttcaatggttgatataagc |
3697024 |
T |
|
| Q |
447 |
ttcaaaaataggtatatatatgttgatgttggagctagaagctatggttctagtataggatcttggtttaggaaacaatatcctaaacagaataagacat |
546 |
Q |
| |
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|| || | ||||||| | |||||||||||||||||||||||||||||||| || || ||| ||||||| |||||||||||| |||||||||||||| | |
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| T |
3697025 |
tttaagagtaggtatgtgtatgttgatgttggagctagaagctatggttcaagcattggaagctggtttaagaaacaatatccaaaacagaataagactt |
3697124 |
T |
|
| Q |
547 |
ttcatgtgtatgcgattgaagccgataagcattttcataaggagtatgggttgaagaaagggcttactttggttccttatgctgcttgggtgaagaatga |
646 |
Q |
| |
|
|| |||| ||||| |||||||| ||||| ||||||||| | ||||||| | |||| |||||| | |||||| | || |||||||| ||||| | |||||| |
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| T |
3697125 |
ttgatgtttatgcaattgaagctgataaacattttcatcaagagtatgtgatgaaaaaaggggtaactttgttaccatatgctgcatgggttaggaatga |
3697224 |
T |
|
| Q |
647 |
ga |
648 |
Q |
| |
|
|| |
|
|
| T |
3697225 |
ga |
3697226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 372 - 574
Target Start/End: Complemental strand, 26957591 - 26957389
Alignment:
| Q |
372 |
ccattgaagccttggattacattgaaaaggaatttgatgaatataaagtatctttcttcaatggttgatatgagtttcaaaaataggtatatatatgttg |
471 |
Q |
| |
|
|||||||| || |||||| ||||||| || || |||| ||| |||||||| | |||||||||||||||| |||||||||| | ||| | ||||||| |
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|
| T |
26957591 |
ccattgaaaccatggattgcattgaagagaaacttgaagaacataaagtacttaacttcaatggttgatataagtttcaaaagcaattatgtttatgttg |
26957492 |
T |
|
| Q |
472 |
atgttggagctagaagctatggttctagtataggatcttggtttaggaaacaatatcctaaacagaataagacatttcatgtgtatgcgattgaagccga |
571 |
Q |
| |
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|| ||||||| |||||||||||||| || || ||| ||||| | ||||||||| || || |||||||| |||||| | || ||||| |||||||| || |
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|
| T |
26957491 |
atattggagcaagaagctatggttcaagcattggaagctggttcaagaaacaatacccaaagcagaataaaacatttgaagtttatgcaattgaagcaga |
26957392 |
T |
|
| Q |
572 |
taa |
574 |
Q |
| |
|
||| |
|
|
| T |
26957391 |
taa |
26957389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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