View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_21 (Length: 303)
Name: NF12832_low_21
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 14304698 - 14304966
Alignment:
| Q |
18 |
gttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcc |
117 |
Q |
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|||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304698 |
gtttcggccaattgttttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcc |
14304797 |
T |
|
| Q |
118 |
tttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304798 |
tttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaatgggcataaggactcaaagttctatcgattgaaatcgatggatat |
14304897 |
T |
|
| Q |
218 |
gttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaag |
286 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14304898 |
gtggctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatgacaaaaaag |
14304966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 14282940 - 14283208
Alignment:
| Q |
18 |
gttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcc |
117 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| || |
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| T |
14282940 |
gttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacc |
14283039 |
T |
|
| Q |
118 |
tttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatat |
217 |
Q |
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|||||| || ||||| |||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||||| |
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| T |
14283040 |
tttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaactgatggatat |
14283139 |
T |
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| Q |
218 |
gttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaag |
286 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14283140 |
gttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatgacaaaaaag |
14283208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 14321089 - 14321357
Alignment:
| Q |
18 |
gttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcc |
117 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || |
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| T |
14321089 |
gttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagtttaaggggtgttttgtaacc |
14321188 |
T |
|
| Q |
118 |
tttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatat |
217 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| | ||||| || ||||| |
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| T |
14321189 |
tttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctatcggtcgaaattgaccgatat |
14321288 |
T |
|
| Q |
218 |
gttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaag |
286 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
14321289 |
gttgctactacatcggatattcttatcacgtgaatacctgatgacccttttacggatatcacaaaaaag |
14321357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 25885771 - 25886039
Alignment:
| Q |
18 |
gttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcc |
117 |
Q |
| |
|
||||||||||||||||| |||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| || |
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| T |
25885771 |
gttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaacatcttctagtttaaggggagttttgtaacc |
25885870 |
T |
|
| Q |
118 |
tttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatat |
217 |
Q |
| |
|
|||||| | ||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||| ||| || ||||| |||| |
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| T |
25885871 |
tttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaaccgatgtatat |
25885970 |
T |
|
| Q |
218 |
gttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaag |
286 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |||||||||||| | || |||||| |||||||| |
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| T |
25885971 |
gtcgctactacatcggatattcttatcacatgaatccctgatgaccctctaatggatatgacaaaaaag |
25886039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 44349615 - 44349883
Alignment:
| Q |
18 |
gttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcc |
117 |
Q |
| |
|
||||||||||||||||| |||| || || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||| || |
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| T |
44349615 |
gttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaatatcttctagtttaaggggagttttgtaacc |
44349714 |
T |
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| Q |
118 |
tttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgattgaaatcgatggatat |
217 |
Q |
| |
|
||||| | ||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||| | | || |||| |||| |
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| T |
44349715 |
gttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagtcggaactgatgtatat |
44349814 |
T |
|
| Q |
218 |
gttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaag |
286 |
Q |
| |
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|| ||||||||||||||||||||||||||| |||| |||||||||||| | || |||||| |||||||| |
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| T |
44349815 |
gtcgctactacatcggatattcttatcacaagaatccctgatgaccctctaatggatatgacaaaaaag |
44349883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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