View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_22 (Length: 296)
Name: NF12832_low_22
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 3057370 - 3057097
Alignment:
| Q |
1 |
tgattgaggggtacgtggagatgaactaatattggaacctaccataatatggaaacaacatcttgatacacaaacataaatgcaaatattacggtacact |
100 |
Q |
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| T |
3057370 |
tgattgaggggtacgtggagatgaactaatattggaacctaccataatatggaaacaacatcttgatacacaaaaataaatgcaaatattacggtacact |
3057271 |
T |
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| Q |
101 |
taaaagagcacaacaagtatcagcacaagttgtcaatcttagaaaagagcacaacaagtattagcacaagttgccaatcttagcttacagacttattaat |
200 |
Q |
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| T |
3057270 |
taaaagagcacaacaagtatcagcacaagttgtcaatcttagaaaagagcacaacaagtattagcacaagttgccaatcttagcttacagacttattaat |
3057171 |
T |
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| Q |
201 |
ttagagaatattgaatactaatttgtgaggggtatggtggaacttgcacttcaacagtaccttcaagcatatgt |
274 |
Q |
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| T |
3057170 |
ttagagaatattgaatactaatttgtgaggggtatggtggaacttgcacttcaacagtaccttcaagcatatgt |
3057097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 3036348 - 3036229
Alignment:
| Q |
155 |
caagtattagcacaagttgccaatcttagcttacagacttattaatttagagaatattgaatactaatttgtgaggggtatggtggaacttgcacttcaa |
254 |
Q |
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| T |
3036348 |
caagtattagcacaagttgccaatctttgcttcccaacttattaatttagagaatattgaatactaattggtgaggggtatggtggaacttgcacttcaa |
3036249 |
T |
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| Q |
255 |
cagtaccttcaagcatatgt |
274 |
Q |
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| T |
3036248 |
cagtaccttcaagcatatgt |
3036229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 3048326 - 3048436
Alignment:
| Q |
160 |
attagcacaagttgccaatcttagcttacagacttattaatttagagaatattgaatactaatttgtgaggggt--atggtggaacttgcacttcaacag |
257 |
Q |
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| T |
3048326 |
attagcacaagctgccaatcttc-cttacaaagttattaatttagagaatattcaatactaattggtgaagggtgtatggtggaacttgcacttcaacag |
3048424 |
T |
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| Q |
258 |
taccttcaagca |
269 |
Q |
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| T |
3048425 |
taccttcaagca |
3048436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 3069732 - 3069815
Alignment:
| Q |
191 |
acttattaatttagagaatattgaatactaatttgtgaggggtatggtggaacttgcacttcaacagtaccttcaagcatatgt |
274 |
Q |
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| T |
3069732 |
acttattaatttagagaatattgaatactaaacggtgaggggtttaacggagcttgcacttcaacagtaccttcaagcatatgt |
3069815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 3036432 - 3036322
Alignment:
| Q |
29 |
atattggaacctaccataatatggaaacaacatcttgatacacaaacataaatgcaaatatt--acggtacactt-aaaagagcacaacaagtatcagca |
125 |
Q |
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| T |
3036432 |
atattgggacctaccttaatatggaaatcacatcttga-acacaaacataaatgcaaatattacacggtacacttaaaaagagc---gcaagtattagca |
3036337 |
T |
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| Q |
126 |
caagttgtcaatctt |
140 |
Q |
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||||||| ||||||| |
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| T |
3036336 |
caagttgccaatctt |
3036322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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