View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_23 (Length: 279)
Name: NF12832_low_23
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 2407356 - 2407603
Alignment:
| Q |
22 |
agaggttacaacaacaaacacatcgttttcttcaatttacgaaaagcactcaacaaaattcaatgatcatattgaacaacaccctccgttcaccaagctc |
121 |
Q |
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| T |
2407356 |
agaggttacaacaacaaacacatcgttttcttcaatttacgaaaagcactcaacaaaattcaatgatcatattgaacaacaccctccgttcaccaagctc |
2407455 |
T |
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| Q |
122 |
tactatgttcatctctaagttgttttcctggtggtgcagctcttaggcacatggagactatgaaactttggttcctttgggacagtcaaagttctccttc |
221 |
Q |
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| T |
2407456 |
tactatgttcatctctaagttggtttcctggtggtgcagctcttaggcacatggagactatgaaactttggttcctttgggacagtcaaagttctccttc |
2407555 |
T |
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| Q |
222 |
cttgcgaacaagatgcatcatttttacgtggctttgttgtgtcctttg |
269 |
Q |
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| T |
2407556 |
cttgcgaacaagatgcatcatttttacgtggctttgttgtgtcctttg |
2407603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 2407011 - 2407069
Alignment:
| Q |
32 |
acaacaaacacatcgttttcttcaatttacgaaaa--gcactcaacaaaattcaatgat |
88 |
Q |
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| T |
2407011 |
acaacaaacacatcattttcttcaatttaccaaaaccgcactcaacaaagttcaatgat |
2407069 |
T |
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