View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_27 (Length: 254)
Name: NF12832_low_27
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 43297824 - 43297574
Alignment:
| Q |
11 |
gaagcagagagtgctgagaatggtatcggtattgtgaagctaatgggacgttgcagtggtaagcttcactcattcttacagtaatgtacaaccttagcct |
110 |
Q |
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| T |
43297824 |
gaagcagagagtgctgagaatggtatcggtgttgtgaagctaatgggacgttgcagtggtaagcttcactcattcttacagtaatgtacaaccttagcct |
43297725 |
T |
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| Q |
111 |
aatggtatagacagtgttgaaatttatgtgtaagtggttagttt-------cacattgattaggaatgaactaaatcaattatatgtaagagtattaacc |
203 |
Q |
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| T |
43297724 |
aatggtatagacagtgttgaaatttatgtgtaagtggttagtttcacaattcacattgattacgaatgaactaaatcaattatatgtaagagtattaacc |
43297625 |
T |
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| Q |
204 |
cagtttaatatgattcaatgagagtgaagtataactgaaatcaaaccaacc |
254 |
Q |
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| T |
43297624 |
cagtttaatatgattcaatgagagtgaagtataactgaaatcaaaccaacc |
43297574 |
T |
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