View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_3 (Length: 597)
Name: NF12832_low_3
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 19 - 586
Target Start/End: Original strand, 33422972 - 33423539
Alignment:
| Q |
19 |
ccaacagctccacaatctgacacaatatacctgattttattcaccacaaaatgttacacttaattaagaactaaccaaccattcattggttcaacaagat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33422972 |
ccaacagctccacaatctgacacaatatacctgattttattcaccacaaaatgttacacttaattaagaactaaccaaccattcattggttcaacaagat |
33423071 |
T |
|
| Q |
119 |
aataagttaagtaaaaagtgaaactaattaatcagtaattattcacccgtggaattcccattgttttctaacagtattcgttaagagattgaaatcggca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423072 |
aataagttaagtaaaaagtgaaactaattaatcagtaattattcacccgtggaattcccattgttttctaacagtattcgttaagagattgaaatcggca |
33423171 |
T |
|
| Q |
219 |
caacttggaattccatttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactacgaaatggtggttgatatgtgtctgcta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423172 |
caacttggaattccatttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactacgaaatggtggttgatatgtgtctgcta |
33423271 |
T |
|
| Q |
319 |
aatcttgcaaactcacctgaagaatcataatatgtcatggcgatttagtaaaagtttctcactctgatcttaaatataagcaaaaatgtatatgcaaaaa |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423272 |
aatcttgcaaactcacctgaagaatcataatatgtcatggcgatttagtaaaagtttctcactctgatcttaaatataagcaaaaatgtatatgcaaaaa |
33423371 |
T |
|
| Q |
419 |
gtacataagtttggaatttggatcaatttcttttgtttatttttaagaccagacctggtaaaaagaggaacataagagcattgtaactaggcatgtgtag |
518 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423372 |
gtacataagtttggaatttggatcaatttcttttgcttatatttaagaccagacgtggtaaaaagaggaacataagagcattgtaactaggcatgtgtag |
33423471 |
T |
|
| Q |
519 |
ttacttacgcgagcatcgaagtgaaagcgattaacacccttccaattgtccaaatcataggcagtgaa |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33423472 |
ttacttacgcgagcatcgaagtgaaagcgattaacacccttccaattgtccaaatcataggcagtgaa |
33423539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 25958183 - 25958046
Alignment:
| Q |
192 |
gtattcgttaagagattgaaatcggcacaacttggaattccatttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactac |
291 |
Q |
| |
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||||| ||||| | |||| |||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| | ||||||||| |
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| T |
25958183 |
gtattggttaacaaattgtaatctgcacagtttggaattccattgacacggttgtaagcacacattattccactagaccgtccttgtactatgcaactat |
25958084 |
T |
|
| Q |
292 |
gaaatggtggttgatatgtgtctgctaaatcttgcaaa |
329 |
Q |
| |
|
||||||| |||||||| || ||||| |||||||||||| |
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| T |
25958083 |
gaaatgggggttgatacgtatctgccaaatcttgcaaa |
25958046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 176 - 339
Target Start/End: Original strand, 25927200 - 25927363
Alignment:
| Q |
176 |
ccattgttttctaacagtattcgttaagagattgaaatcggcacaacttggaattccatttacacggttataagcacacattattccactagcccgtcct |
275 |
Q |
| |
|
||||| || |||| |||| || ||||| |||||| |||| ||||| |||||| |||||| |||||||| |||||||||||||||||||| | |||||| |
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| T |
25927200 |
ccatttttgtctagcagttttggttaacagattgtaatctgcacagtttggaactccattgacacggttgtaagcacacattattccactggatcgtcct |
25927299 |
T |
|
| Q |
276 |
tgctcaatgcaactacgaaatggtggttgatatgtgtctgctaaatcttgcaaactcacctgaa |
339 |
Q |
| |
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|| | ||||||||| |||||||||||||||| || || || |||||||||||| | ||||||| |
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| T |
25927300 |
tgtactatgcaactatgaaatggtggttgatacgtatccgccaaatcttgcaaagtaacctgaa |
25927363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 25887183 - 25887330
Alignment:
| Q |
192 |
gtattcgttaagagattgaaatcggcacaacttggaattccatttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactac |
291 |
Q |
| |
|
||||| ||||| |||||| |||| ||||| |||||| |||||| |||||||| ||||||||||| |||||||||| |||||||| | | ||||||| |
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|
| T |
25887183 |
gtattggttaaaagattgtaatctgcacagtttggaactccattgacacggttgtaagcacacatgattccactagatcgtccttgtaccacgcaactat |
25887282 |
T |
|
| Q |
292 |
gaaatggtggttgatatgtgtctgctaaatcttgcaaactcacctgaa |
339 |
Q |
| |
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|||||| ||||||||||| ||||| |||||||| ||| | ||||||| |
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| T |
25887283 |
gaaatgagggttgatatgtatctgccaaatcttgtaaagtaacctgaa |
25887330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 25909867 - 25910014
Alignment:
| Q |
192 |
gtattcgttaagagattgaaatcggcacaacttggaattccatttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactac |
291 |
Q |
| |
|
||||| ||||| |||||| |||| ||||| |||||| |||||| ||||| || |||||||||||||||||||| | |||||||| | | ||||||| |
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|
| T |
25909867 |
gtattggttaaaagattgtaatctgcacagtttggaactccattgacacgattgtaagcacacattattccactggatcgtccttgtactacgcaactat |
25909966 |
T |
|
| Q |
292 |
gaaatggtggttgatatgtgtctgctaaatcttgcaaactcacctgaa |
339 |
Q |
| |
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|||||| |||||||| || || ||||||||||||||| | ||||||| |
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| T |
25909967 |
gaaatgagggttgatacgtatccgctaaatcttgcaaagtaacctgaa |
25910014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 583
Target Start/End: Original strand, 25887755 - 25887792
Alignment:
| Q |
546 |
cgattaacacccttccaattgtccaaatcataggcagt |
583 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
25887755 |
cgattcacacccttccaattttccaaatcataggcagt |
25887792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 583
Target Start/End: Original strand, 25910362 - 25910399
Alignment:
| Q |
546 |
cgattaacacccttccaattgtccaaatcataggcagt |
583 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
25910362 |
cgattcacacccttccaattttccaaatcataggcagt |
25910399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Original strand, 43752156 - 43752193
Alignment:
| Q |
375 |
tctcactctgatcttaaatataagcaaaaatgtatatg |
412 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
43752156 |
tctccctctgatcttaaatataagcaaaaaagtatatg |
43752193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 11496118 - 11496146
Alignment:
| Q |
377 |
tcactctgatcttaaatataagcaaaaat |
405 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
11496118 |
tcactctgatcttaaatataagcaaaaat |
11496146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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