View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_30 (Length: 242)
Name: NF12832_low_30
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2323702 - 2323914
Alignment:
| Q |
1 |
ttaatgctgagaagagagtgattggatttgattccaaattaacagagtcagacaaaataatactgctttaaacaaagagacttgattaagatggattaaa |
100 |
Q |
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| T |
2323702 |
ttaatgctgagaagagagtgat-ggatttgattccaaattaaaagagtcagacaaaataatactgctttaaacaaagagacttgattaagatggattaaa |
2323800 |
T |
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| Q |
101 |
aaac-atgcaattggacatgaaaaccctttatgctatagctagtggattctattaacaaatacaatttggttcaattggttgtatttcgctcgccatctt |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
2323801 |
aaactatgcaattggacatgaaaaccctttatgctatagctagtggattctattaacaaata----------caattggttgtatttcgctcgccacctt |
2323890 |
T |
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| Q |
200 |
taagaaatttttctagctcgagcg |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
2323891 |
taagaaatttttctagctcgagcg |
2323914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 2344858 - 2344895
Alignment:
| Q |
143 |
tggattctattaacaaatacaatttggttcaattggtt |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2344858 |
tggattctattaacaaatacaatttggttcaattggtt |
2344895 |
T |
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