View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12832_low_36 (Length: 220)

Name: NF12832_low_36
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12832_low_36
NF12832_low_36
[»] scaffold0650 (3 HSPs)
scaffold0650 (17-203)||(7052-7238)
scaffold0650 (154-203)||(6777-6826)
scaffold0650 (91-141)||(6933-6983)
[»] chr2 (4 HSPs)
chr2 (17-203)||(18431955-18432141)
chr2 (91-141)||(18431836-18431886)
chr2 (160-192)||(7753017-7753049)
chr2 (133-190)||(23689348-23689405)
[»] chr1 (1 HSPs)
chr1 (156-187)||(24072976-24073007)
[»] chr4 (1 HSPs)
chr4 (133-189)||(50881666-50881723)
[»] chr6 (1 HSPs)
chr6 (32-64)||(19237183-19237215)


Alignment Details
Target: scaffold0650 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 7238 - 7052
Alignment:
Q  17 tgaaggaatgacaaagaaaaaactgaaacttggaattaaattgaatggaaaataatttgcagaaagtgtattgtaaattgcggtagctaaaattaaactg 116  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7238 tgaagaaatgacaaagaaaaaactgaaacttggaattaaactgaatggaaaataatttgcagaaagtgtattgtaaattgcggtagctaaaagtaaactg 7139  T
Q  117 aaagcttaaacaaaaatctctaaaaagcttggtgtctagaactgattcttgaaggtctatttataggcaaaaattcattagagagtg 203  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7138 aaagcttaaataaaaatctctaaaaaacttggtgtctagaactgattcttaaaggtctatttataggcaaaaatgcatcagagagtg 7052  T

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Target: scaffold0650; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 6826 - 6777
Alignment:
Q  154 agaactgattcttgaaggtctatttataggcaaaaattcattagagagtg 203  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6826 agaactgattcttgaaggtctatttataggcaaaaattcatcagagagtg 6777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 6983 - 6933
Alignment:
Q  91 aaattgcggtagctaaaattaaactgaaagcttaaacaaaaatctctaaaa 141  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  6983 aaattgcagtagctaaaagtaaactgaaagcttaaacaaaaatctgtaaaa 6933  T

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Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 18432141 - 18431955
Alignment:
Q  17 tgaaggaatgacaaagaaaaaactgaaacttggaattaaattgaatggaaaataatttgcagaaagtgtattgtaaattgcggtagctaaaattaaactg 116  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18432141 tgaagaaatgacaaagaaaaaactgaaacttggaattaaactgaatggaaaataatttgcagaaagtgtattgtaaattgcggtagctaaaagtaaactg 18432042  T
Q  117 aaagcttaaacaaaaatctctaaaaagcttggtgtctagaactgattcttgaaggtctatttataggcaaaaattcattagagagtg 203  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  18432041 aaagcttaaataaaaatctctaaaaaacttggtgtctagaactgattcttaaaggtctatttataggcaaaaatgcatcagagagtg 18431955  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 18431886 - 18431836
Alignment:
Q  91 aaattgcggtagctaaaattaaactgaaagcttaaacaaaaatctctaaaa 141  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  18431886 aaattgcagtagctaaaagtaaactgaaagcttaaacaaaaatctgtaaaa 18431836  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 7753049 - 7753017
Alignment:
Q  160 gattcttgaaggtctatttataggcaaaaattc 192  Q
    |||||||||||||||||||||||||||||||||    
T  7753049 gattcttgaaggtctatttataggcaaaaattc 7753017  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 23689405 - 23689348
Alignment:
Q  133 tctctaaaaagcttggtgtctagaactga-ttcttgaaggtctatttataggcaaaaat 190  Q
    |||||||||||||||||||||  |||||| ||||| | |||||||||||||||||||||    
T  23689405 tctctaaaaagcttggtgtcttcaactgagttcttca-ggtctatttataggcaaaaat 23689348  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 24072976 - 24073007
Alignment:
Q  156 aactgattcttgaaggtctatttataggcaaa 187  Q
    ||||||||||||||||||||||||||||||||    
T  24072976 aactgattcttgaaggtctatttataggcaaa 24073007  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 50881666 - 50881723
Alignment:
Q  133 tctctaaaaa-gcttggtgtctagaactgattcttgaaggtctatttataggcaaaaa 189  Q
    |||||||||| |||||||| ||  |||||| |||| ||||||||||||||||||||||    
T  50881666 tctctaaaaatgcttggtgccttcaactgagtctttaaggtctatttataggcaaaaa 50881723  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 19237215 - 19237183
Alignment:
Q  32 gaaaaaactgaaacttggaattaaattgaatgg 64  Q
    |||||||||||| ||||||||||||||||||||    
T  19237215 gaaaaaactgaatcttggaattaaattgaatgg 19237183  T

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