View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12832_low_38 (Length: 205)
Name: NF12832_low_38
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 40894938 - 40894765
Alignment:
| Q |
19 |
gaacatctactattactattatacatcaagtgacatttttcgcttgtcattgtcgcaagagattttggtgttgccttcaaa---atcatcaaactaatca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
40894938 |
gaacatctactattactattatacatcaagtgacatttttcgcttgtcaatgtcgcaagagtttttggtgttgccttcagaatcatcatcaaactaatca |
40894839 |
T |
|
| Q |
116 |
tcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaat |
189 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
40894838 |
tcttcagaatcatcatttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaat |
40894765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 44153434 - 44153530
Alignment:
| Q |
93 |
cttcaaaatcatcaaactaatcatcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaat |
189 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153434 |
cttcagaatcatcaaactaatcgtcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaat |
44153530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 40898077 - 40898259
Alignment:
| Q |
17 |
atgaacatctactattactattatacatcaagtgacatttttcgcttgtcattgtcgcaagagattttggtgttgccttcaaaatcatcaaacta----a |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |
|
|
| T |
40898077 |
atgaacatctactattactattataca------gacatttttcgcttgtcattgtcgcaagagattttggttttgccttcagaatcatcaaactaaggca |
40898170 |
T |
|
| Q |
113 |
tcatc---------ttcagaatcatcattcgcatctgctgatttccacttcggcacatc---agagctcagctcctccaaggttgaaat |
189 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40898171 |
taatcagcaccaaaaacagaatcatcatttgcatctgctgatttccacttctgcacatcagaagagctcagctcctccaaggttgaaat |
40898259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University