View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_4 (Length: 549)
Name: NF12832_low_4
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 529
Target Start/End: Original strand, 3426329 - 3426857
Alignment:
| Q |
14 |
acagacgacggagtgggcatgctaaaacccaaccaaatgaaatacaatgaacactccaaagattactaaccacacctactaggaccagacacatgacaag |
113 |
Q |
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| T |
3426329 |
acagacgagggagtgggcatgctaaaacccaaccaaaagaaatacaatgaacactccaaagattactaaccacacctactaggaccagacacatgacaag |
3426428 |
T |
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| Q |
114 |
aaagagtgatcatatccaagtatcaacttcatgttatgcttcaaaaatgtcaacatacatcgaggataagattacatgagcttgttggttctaaatattg |
213 |
Q |
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| T |
3426429 |
aaagagtgatcatatccaagtatcaacttcgtgttatgcttcaaaaatgtcaacatacatcgaggataagattacatgagcttgttggttctaaatattg |
3426528 |
T |
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| Q |
214 |
tgtgttatgtaggtaaacagtttgtaagcaccacatggtcttctctttaaggtaatagacgtattctagatattctgctttaagtgatcaacaaatccta |
313 |
Q |
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| T |
3426529 |
tgtgttatgtaggtaaacagattgtaagcaccacatggtcttctctttaaggtaatagacgtattctagatattctgctttaagtgatcaacaaatccta |
3426628 |
T |
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| Q |
314 |
agcaccaaacaattattcgtttattcttgacttcattttgatagtatataatatgcacacttttgaaaacgttagaggataaaatat-ct----ttttgt |
408 |
Q |
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| T |
3426629 |
agcaccaaacaattattcgtttattcttgacttcattttgatagtatataatatgcacacttttgaaaacgttagaggataaaatatgctcatattttgt |
3426728 |
T |
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| Q |
409 |
tatcatcaaaattcgaagataacccat--------attttgaatctaaccatattaacatggtatacattcaatctaacattcacattcttgttagatga |
500 |
Q |
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| T |
3426729 |
tatcatcaaaattcgaagataattgtttcttgaccaacttgaatctaaccatattaacatggtatacattcaatctaacattcacactcttgttagatga |
3426828 |
T |
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| Q |
501 |
aactcatatgggttactccactctatgta |
529 |
Q |
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| T |
3426829 |
aacccatatgggttactccaatctatgta |
3426857 |
T |
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