View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12832_low_6 (Length: 472)
Name: NF12832_low_6
Description: NF12832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12832_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 32853440 - 32853902
Alignment:
| Q |
1 |
aattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853440 |
aattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatttt |
32853539 |
T |
|
| Q |
101 |
tatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcatagt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853540 |
tatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcatagt |
32853639 |
T |
|
| Q |
201 |
agagaataacttatttgcatcatcttctgcagaaaaattaattccctttannnnnnnnnnnnnnnnnnnnnnnnnatgccaacaatctctacttgaatgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32853640 |
agagaataacttatttgcatcatcttctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaatgg |
32853739 |
T |
|
| Q |
301 |
ttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgc-aaataaagcaataagaattagaattacctcgtatc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32853740 |
ttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaaataaagcaataagaattagaattacctcgtatc |
32853839 |
T |
|
| Q |
400 |
ctttctcctcctcttcctttgtatccataatgccttccatgacctctgttggaaggatgtcca |
462 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853840 |
ctttctcctcctcttcctttgtatccataatgccttccatgacctctgttggaaggatgtcca |
32853902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 37176576 - 37177037
Alignment:
| Q |
1 |
aattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176576 |
aattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatttt |
37176675 |
T |
|
| Q |
101 |
tatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
37176676 |
tatttagctcttcaaatatggtttgattccctgttacatgattgctacaaccactatctaaaaaccacatctcaccagattttttatcattaatcatagt |
37176775 |
T |
|
| Q |
201 |
agagaataacttatttgcatcatcttctgcagaaaaattaattccctttannnnnnnnnnnnnnnnnnnnnnnnnatgccaacaatctctacttgaatgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37176776 |
agagaataacttatttgcatcatcttttgcagaaaaattaattccctttattctttcatcattttctttcttcttatgccaacaatctctacttgaatgg |
37176875 |
T |
|
| Q |
301 |
ttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtatcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37176876 |
ttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtatcc |
37176975 |
T |
|
| Q |
401 |
tttctcctcctcttcctttgtatccataatgccttccatgacctctgttggaaggatgtcca |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
37176976 |
tttctcctcctcttcctttgtatccataatgccttccatgacctatgttggaaggatgtcca |
37177037 |
T |
|
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