View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12833_high_13 (Length: 243)

Name: NF12833_high_13

Description: NF12833

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12833_high_13

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 139; E-Value: 7e-73

Query Start/End: Original strand, 19 - 165

Target Start/End: Complemental strand, 16694970 - 16694825

Alignment:

Q	19	gttattttatctcttcaacttacaaagtcaaacttaaattgttacaacttacaatgttttttgttaaaagtttgttaatttatttccttcaaaataattt	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16694970	gttattttatctcttcaacttacaaagtcaaacttaaattgttacaacttacaatgttttttgttaaaagtttgttaatttatttccttcaaaataattt	16694871	T

Q	119	ctttgttgaacttaatttgtatgtgttgttaagaataaattatgttg	165	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16694870	ctttgttgaacttaatttgtatgtgttgtt-agaataaattatgttg	16694825	T

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Target: chr5; HSP #2

Raw Score: 66; E-Value: 3e-29

Query Start/End: Original strand, 167 - 232

Target Start/End: Complemental strand, 16694596 - 16694531

Alignment:

Q	167	cactttctataaggagtgttttcttcatttgatgcttaaacaaaacctctacatggacccattcat	232	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16694596	cactttctataaggagtgttttcttcatttgatgcttaaacaaaacctctacatggacccattcat	16694531	T

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