View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12833_high_15 (Length: 240)
Name: NF12833_high_15
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38868496 - 38868267
Alignment:
| Q |
1 |
tcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagtttcgaggaagatgttcacaaattagaacagttatatgctttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38868496 |
tcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagtttcgaggaagatgttcacaaattagaacagttatatgctttta |
38868397 |
T |
|
| Q |
101 |
ccataatcaaaagtactttggaagactgtaggaatgtctttgagaggaaagtctatataagactagaagataactttgacatattgaaggattcaaagcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38868396 |
ccataatcaaaagtactttggaagactataggaatgtctttgagaggaaagtctatataagactagaagataactttgacatattgaaggattcaaagcc |
38868297 |
T |
|
| Q |
201 |
actagatttgaggccaggttaatttctgtg |
230 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
38868296 |
actagatttgagaccaggttaatttctgtg |
38868267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 38806766 - 38806821
Alignment:
| Q |
3 |
gaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagttt |
59 |
Q |
| |
|
|||||| |||||||||||| |||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
38806766 |
gaggtttctggatttgtctcggtgtacaatcgaagaggact-taccatgatcagttt |
38806821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 38849486 - 38849438
Alignment:
| Q |
4 |
aggttgctggatttgtcttggtgtacagttgaagaggactataccatga |
52 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
38849486 |
aggttgttggatttgtcttagtgtatagttgaagaggacaataccatga |
38849438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University