View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_high_21 (Length: 201)
Name: NF12833_high_21
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 41261096 - 41260934
Alignment:
| Q |
15 |
agcacagaacgaagcaagcaagttgaagtaaaaacaaccaaagcagcaaacaacgtgggcaagaagaaatcaaagtgggaggtgctaaccaccacatgtt |
114 |
Q |
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| T |
41261096 |
agcacagaacgaagcaagcaagttgaagtaaaaacaaccaaagcagcaaacaacgtgggcaagaagaaatcaaagtgggaggtgctaaccaccacatgtt |
41260997 |
T |
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| Q |
115 |
ccggcaagcaaaccatctccgtcggagaatcaaaaggaatcctcacaaattcatgatgatgac |
177 |
Q |
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| T |
41260996 |
ccggcaagcaaaccatctccgtcggagaatcaaaaggaatcctcacaaattcatgatgatgac |
41260934 |
T |
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