View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_high_3 (Length: 450)
Name: NF12833_high_3
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 31719625 - 31719208
Alignment:
| Q |
17 |
aatatagttgcatgccaaattgaccaaaagcccttacgcaacttcttattccgcacctccgcattccaacaatcaaatgcacaaaaaggttatttggaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31719625 |
aatatagttgcatgccaaattgaccaaaagcccttacgcaacttcttattccgcacctccgcattccaacaatcaaatgcacaaaaagattatttggaat |
31719526 |
T |
|
| Q |
117 |
tatgaagttaaaatttaaccaccggaacaacttttcccacactctaagcgtcacctcgcaatgcaaaaagatatgggaagaggattcctcacctctatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719525 |
tatgaagttaaaatttaaccaccggaacaacttttcccacactctaagcgtcacctcgcaatgcaaaaagatatgggaagaggattcctcacctctatca |
31719426 |
T |
|
| Q |
217 |
caaatagagcaaaataaggacacgcttgtcagtaagaagttcctccttgctagatttattttggttcggaaagcgaccgtgaagaagtttccaagagaaa |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719425 |
caaatagagcaaaataaggacacgcttgtcggtaagaaattcctccttgctagatttattttggttcggaaagcgaccgtgaagaagtttccaagagaaa |
31719326 |
T |
|
| Q |
317 |
gctactacctttgatggaaccggactttgccaaattgactcgaagacctcctcttcggaactcgacaaatgcatatttgaatccaacaaatcaaacatca |
416 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31719325 |
gctactacctttgacggaaccggactttgccaaattgactcgaagacctcctcttcggaactcgacaaatgcatatttgaatccaacaaatcaaaaatca |
31719226 |
T |
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| Q |
417 |
aagaatatgccgacttca |
434 |
Q |
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|||||||||||||||||| |
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| T |
31719225 |
aagaatatgccgacttca |
31719208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 5451693 - 5451355
Alignment:
| Q |
11 |
atcatcaatatagttgcatgccaaattgaccaaaagcccttacgcaacttcttattccgcacctccgcattccaacaatcaaa-tgcacaaaaaggttat |
109 |
Q |
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|||||| ||| || ||||| ||||||| ||||| | || |||| |||||||||||| | ||||||||| | ||||| ||||| ||||||||||| ||| |
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| T |
5451693 |
atcatccataaagatgcataccaaattaaccaataacctttacacaacttcttatttcaaacctccgcactacaacattcaaaatgcacaaaaagattag |
5451594 |
T |
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| Q |
110 |
ttggaattatgaagttaaaatttaaccaccggaacaacttttcccacactctaagcgtcacctcgcaatgcaaaaagatatgggaagaggattcctcacc |
209 |
Q |
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| T |
5451593 |
gtggaatgaagaagttaaaatttaaccaccgtaacaccttttcccacactctaagcatcacttcacaatgcaagaagatatgagaggaggtttcctcacc |
5451494 |
T |
|
| Q |
210 |
tctatcacaaatagagcaaaataaggacacgcttgtcagtaagaagttcctccttgctagatttattttggttcggaaagcgaccgtgaagaagtttcca |
309 |
Q |
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|| ||| | |||||||||||||||| | | ||| |||| | || |||||||||||||| || |||| |||||| ||| | |||||| |||| || |
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| T |
5451493 |
actgccac--agagagcaaaataaggactcaccggtcggtaaaacatttctccttgctagattgatcttgg-tcggaatacgatcatgaagacgttttca |
5451397 |
T |
|
| Q |
310 |
agagaaagctactacctttgatggaaccggactttgccaaat |
351 |
Q |
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|||||||||||| |||||||||||| || |||||||||||| |
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| T |
5451396 |
agagaaagctacaacctttgatggagccaaactttgccaaat |
5451355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 29037290 - 29037222
Alignment:
| Q |
25 |
tgcatgccaaattgaccaaaagcccttacgcaacttcttattccgcacctccgcattccaacaatcaaa |
93 |
Q |
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||||||||||||| ||||| | ||||||| |||||||||||||||||||| |||| ||||||| ||||| |
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| T |
29037290 |
tgcatgccaaattaaccaataacccttacacaacttcttattccgcaccttcgcactccaacattcaaa |
29037222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 15444049 - 15444209
Alignment:
| Q |
32 |
caaattgaccaaaagcccttacgcaacttcttattccgcacctccgcattccaacaatcaaa-tgcacaaaaaggttatttggaattatgaagttaaaat |
130 |
Q |
| |
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|||||||||| | ||||||||| ||||||||| || ||||||||||| || |||| ||||| | |||| | | |||| | |||||| ||||||||||| |
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| T |
15444049 |
caaattgaccgatagcccttacataacttcttactctgcacctccgcactctaacagtcaaaatccacagataaattatgtagaattaagaagttaaaat |
15444148 |
T |
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| Q |
131 |
ttaaccaccggaacaacttttcccacactctaagcgtcacctcgcaatgcaaaaagatatg |
191 |
Q |
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| | ||| ||||||| |||||| ||||| | | || |||||| |||||||| || ||||| |
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| T |
15444149 |
tgagccatcggaacaccttttctcacaccttcatcgccacctcacaatgcaagaatatatg |
15444209 |
T |
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