View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12833_high_4 (Length: 450)
Name: NF12833_high_4
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 82 - 431
Target Start/End: Original strand, 5576236 - 5576587
Alignment:
| Q |
82 |
agacaattatgcagaaatcaaatcataaaaacctgttactatacaaacagccccaaacaatggtcttgcactgtatcgtcttctctcatggagcttccac |
181 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576236 |
agacaattatgcagaagtcaaatcataaaaacctgttactatacaaacagccccaaacaatagtcttgcactgtatcgtcttctctcatggagcttccac |
5576335 |
T |
|
| Q |
182 |
ttcagctcgccaatgaaataggagaggagaactttgtgagctggatgtggcaagnnnnnnncagttattctgtctatgggcaatggattgaaacaatgtc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5576336 |
ttcagctcgccaatgaaataggagaggagaactttgtgagctggatgtggcaagaaaaaaaaaattattctatctatgggcaatggattgaaacaatgtc |
5576435 |
T |
|
| Q |
282 |
aaaaagaaaacaaaacgcagtagttggagagatgttaaaatggcgaagagatcatca--acatgattggaagagcagttcaaacataaagttgtgttgtg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
5576436 |
aaaaagaaaacaaaacgcagtagttggagagatgttaaaatggcgatgagatcatcaacacatgattggtagagcagttcaaacataaagttgtgttatg |
5576535 |
T |
|
| Q |
380 |
cataacctttaatttaaaatgagggaactttgttaaaagtatcagatttaaa |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576536 |
cataacctttaatttaaaatgagggaactttgttaaaagtatcagatttaaa |
5576587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University