View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_low_10 (Length: 338)
Name: NF12833_low_10
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 42 - 325
Target Start/End: Original strand, 37506860 - 37507145
Alignment:
| Q |
42 |
tattttggtcaacgtaaattgatcttttacaaagaagttaggtccattttcagtnnnnnnncaatttgaagtaacttttgttcacatatataatgcgagt |
141 |
Q |
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| T |
37506860 |
tattttggtcaacctaaattgatcttttacaaagaagttaggtccatttttagtaaaaaaacaatttgaagtaacttttgttcacatatataatgcgagt |
37506959 |
T |
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| Q |
142 |
aagcaaattaaatgctcacaagaagaccatgagacaaccaat-nnnnnnncatatattatctgtaataacgttttaaatcattaataaaatcat-tttta |
239 |
Q |
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| T |
37506960 |
aagcaaattaaatgctcacaagaagaccatgagacaaccaataaaaaaaacatatattatctgtaataacgttttaaatcattaataaaatcatctttta |
37507059 |
T |
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| Q |
240 |
ttgtgagnnnnnnnnntaatcatagaaaatatcatcttaattttctttcacgattttcgtgaacatttgtgttacttctttggcct |
325 |
Q |
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| T |
37507060 |
ttgtgagaaaaaaaaataatcatagaaaatatcatcttaattttctttcacaattttcgtgaacatttgtgttacttctttggcct |
37507145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 35903815 - 35903873
Alignment:
| Q |
111 |
agtaacttttgttcacatatataatgcga-gtaagcaaattaaatgctcacaagaagac |
168 |
Q |
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| T |
35903815 |
agtaatttttgttcccatatataatgccaagtcagaaaattaaatgctcacaagaagac |
35903873 |
T |
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