View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_low_13 (Length: 287)
Name: NF12833_low_13
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 38628181 - 38628437
Alignment:
| Q |
18 |
catctaattataaacataggcatagcatccagactgagcaagaagaagtgttcaaaagtagattacttcaagttttatttaacattgaaggctacagcca |
117 |
Q |
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| T |
38628181 |
catctaattataagcataggcatagcatccagactgagcaagaagaattgttcaaaagtagattacttcaagttttgtttaacattgaaggctacagcca |
38628280 |
T |
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| Q |
118 |
aacacg-ttttctttccaaagtaagacctactctcacctcctccccttcatatattttccaacctatatatatactcatgatgaggcatatattcttcac |
216 |
Q |
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| T |
38628281 |
aacacgtttttgtttccaaagtaagacctactctcacctcctccccttcatatattttccaacctatatatatactc---atgaggcatatattcttcac |
38628377 |
T |
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| Q |
217 |
ctcaaccttaattagtatccaacagcatatatacatacttgcataccattcgcttccttt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628378 |
ctcaaccttaattagtatccaacagcatatatacatacttgcataccattcgcttccttt |
38628437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 38698112 - 38697894
Alignment:
| Q |
58 |
agaagaagtgttcaaaagtagattacttcaagttttatttaacattgaaggctacagccaaacacg-ttttctttccaaagtaagacctactctcacctc |
156 |
Q |
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| T |
38698112 |
agaagaagagttcaaaagtggattgcttcaacttctgtctaaaattgaaggctgcagccaaacacgtttttgtttacaaagtaatacctactctcatctc |
38698013 |
T |
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| Q |
157 |
ctccccttc------atatattttccaacctatatatat--actcatga---tgaggcatatattcttcacctcaaccttaattagtatccaacagcata |
245 |
Q |
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| T |
38698012 |
ttccccttcaccataatatattccccaacctatatatatacactaatgaggcagaggcagata-tctccacctcaaccttaattcatatccaacaacaac |
38697914 |
T |
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| Q |
246 |
tatacatacttgcataccattc |
267 |
Q |
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||| ||||||||||||||||| |
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| T |
38697913 |
tat--atacttgcataccattc |
38697894 |
T |
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