View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12833_low_16 (Length: 250)
Name: NF12833_low_16
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 32552869 - 32553108
Alignment:
| Q |
11 |
cagagattctgcaacaataggatttgcacttttttatataatatattatctctatccaatccatgacaatgccatgcaacaaacatgtcattttctaaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32552869 |
cagagattctgcaacaataggatttgcacttttttatataatatattatctctatccaatccatgacaatgccatgcaacaaacatgtaattttctaaga |
32552968 |
T |
|
| Q |
111 |
gctgcatcgttataaagtgcaatgtaatgtcaagttgtggaataatatacatctttttgtacttgtctaagcttttgctaattttgatcttgttattaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32552969 |
gctgcatcgttataaagtgcaatgtaatgtcaagttgtggaataatatacatctttttgtacttgtctaagcttttgctaattttgatcttgttattaag |
32553068 |
T |
|
| Q |
211 |
ttagagagggagaaatagggatttaaggataacacttcac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32553069 |
ttagagagggagaaatagggatttaaggataacacttcac |
32553108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University